Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B03
         (564 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)                     139   1e-33
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)               117   6e-27
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.49 
SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   6.1  
SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
          Length = 644

 Score =  139 bits (337), Expect = 1e-33
 Identities = 67/90 (74%), Positives = 76/90 (84%)
 Frame = +1

Query: 295 TRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNVGIKCATITP 474
           T +I AK  + LI PY+ LD  Y+DLGL HRDAT+D+VT++AA AI KH+VGIKCATITP
Sbjct: 10  TGLIAAKCTQ-LISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITP 68

Query: 475 DEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
           DE RVEEFKLKKMW SPNGTIRNILGGTVF
Sbjct: 69  DEARVEEFKLKKMWKSPNGTIRNILGGTVF 98


>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
          Length = 296

 Score =  117 bits (282), Expect = 6e-27
 Identities = 55/67 (82%), Positives = 61/67 (91%)
 Frame = +1

Query: 364 YDLGLPHRDATDDQVTIDAAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRN 543
           YDL + +RDAT+DQVTIDAA AI + +VGIKCATITPDE+RVEEFKLKKMW SPNGTIRN
Sbjct: 6   YDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRN 65

Query: 544 ILGGTVF 564
           ILGGTVF
Sbjct: 66  ILGGTVF 72


>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1378

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +1

Query: 373 GLPHRDATDDQVTIDAAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILG 552
           G+ HRD   D + +     +   + G  CATITP++ +         W++P    R   G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394

Query: 553 GTV 561
             V
Sbjct: 395 PRV 397


>SB_831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 321 LNLSPNYAGHLISIHFNNWISSQNPL 244
           +++SP+Y GH+ +     WIS Q  L
Sbjct: 255 MSVSPHYCGHVQAKELGTWISRQQTL 280


>SB_53344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1554

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -2

Query: 191  NNFFAFLPTIFTWHFIKSSTLLNVSATISTCQISAQVAPPMYTMIS*R 48
            N F  +LPT + W+FI++  +  VS T  T Q+S    P +   +S R
Sbjct: 1445 NTFKWYLPT-YNWYFIRTGHMQKVSRTDHT-QLSITSLPVLDNPLSAR 1490


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -1

Query: 483  LFIRSDSGTFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIRENKLFLNL 313
            LF++    T +  +   +GV R   H+++  +   QT +    +QL IREN+ FL++
Sbjct: 2535 LFVQDYYYTVERLLAGIFGVPR--DHVVIFGIQQNQTTLPSVDIQLAIRENQGFLSV 2589


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,359
Number of Sequences: 59808
Number of extensions: 348751
Number of successful extensions: 870
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1325051197
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)