Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B03
         (564 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   3.7  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.5  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.6  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.6  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.6  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 200 TYFNNFFAFLPTIFTWHF 147
           +Y ++ FA + TIF W F
Sbjct: 206 SYNSDIFAMIGTIFLWLF 223


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
 Frame = +3

Query: 36  FTT-TPLADHSVHWWRY 83
           FTT TP+ ++   WW Y
Sbjct: 152 FTTYTPVCEYDHTWWPY 168


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 VPRKNGRKERKKVVKICERTYTYSFK 227
           V R+   KER     +CER + +S K
Sbjct: 137 VHRRIHTKERPYKCDVCERAFEHSGK 162


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 151 CHVKMVGRNAKKLLKYVSELTPIHSRNYGTAKRVLAT 261
           C   ++   A  L +Y +   PI+     T KRVLAT
Sbjct: 120 CTASILNLCAIALDRYWAITDPINYAQKRTLKRVLAT 156


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 151 CHVKMVGRNAKKLLKYVSELTPIHSRNYGTAKRVLAT 261
           C   ++   A  L +Y +   PI+     T KRVLAT
Sbjct: 120 CTASILNLCAIALDRYWAITDPINYAQKRTLKRVLAT 156


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +1

Query: 151 CHVKMVGRNAKKLLKYVSELTPIHSRNYGTAKRVLAT 261
           C   ++   A  L +Y +   PI+     T KRVLAT
Sbjct: 120 CTASILNLCAIALDRYWAITDPINYAQKRTLKRVLAT 156


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,761
Number of Sequences: 438
Number of extensions: 3168
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)