Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_B03
(564 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NA... 171 4e-43
At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NA... 170 6e-43
At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NA... 169 1e-42
At5g49680.1 68418.m06151 cell expansion protein, putative simila... 29 1.6
At1g26140.1 68414.m03191 hypothetical protein 29 2.1
At3g20260.1 68416.m02566 expressed protein 27 6.5
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 27 8.7
At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase fa... 27 8.7
At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase fa... 27 8.7
At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase fa... 27 8.7
At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative si... 27 8.7
>At1g65930.1 68414.m07481 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase SP|Q40345 from [Medicago
sativa]
Length = 410
Score = 171 bits (415), Expect = 4e-43
Identities = 77/107 (71%), Positives = 90/107 (84%)
Frame = +1
Query: 244 KRVLATNPIVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAA 423
+++ NPIVEMDGDEMTR+IW IK+KLI P+V+LD Y+DLGLPHRDATDD+VTI++A
Sbjct: 4 EKIKVANPIVEMDGDEMTRVIWKSIKDKLITPFVELDIKYFDLGLPHRDATDDKVTIESA 63
Query: 424 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
A K+NV IKCATITPDE RV EF LK+MW SPNGTIRNIL GTVF
Sbjct: 64 EATKKYNVAIKCATITPDEGRVTEFGLKQMWRSPNGTIRNILNGTVF 110
>At1g54340.1 68414.m06195 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
NADP-isocitrate dehydrogenase GI:5764653 from [Citrus
limon]; Nicotiana tabacum SP|P50218
Length = 416
Score = 170 bits (413), Expect = 6e-43
Identities = 76/107 (71%), Positives = 90/107 (84%)
Frame = +1
Query: 244 KRVLATNPIVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAA 423
+++ NP+VEMDGDEMTR+IW IK+KLIFP+++LD Y+DLGLP+RD TDD+VTI+ A
Sbjct: 4 EKIKVINPVVEMDGDEMTRVIWKFIKDKLIFPFLELDIKYFDLGLPNRDFTDDKVTIETA 63
Query: 424 HAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
A LK+NV IKCATITPDE RV EF LKKMW SPNGTIRNIL GTVF
Sbjct: 64 EATLKYNVAIKCATITPDEARVREFGLKKMWRSPNGTIRNILNGTVF 110
>At5g14590.1 68418.m01711 isocitrate dehydrogenase, putative / NADP+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NADP+) [Nicotiana tabacum]
GI:3021512; contains Pfam domain PF00180: dehydrogenase,
isocitrate/isopropylmalate family
Length = 485
Score = 169 bits (411), Expect = 1e-42
Identities = 77/110 (70%), Positives = 91/110 (82%)
Frame = +1
Query: 235 GTAKRVLATNPIVEMDGDEMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTI 414
G + R+ NPIVEMDGDEMTR+IW+ IKEKLI PY+ LD Y+DLG+ +RDATDD+VT+
Sbjct: 71 GGSDRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTV 130
Query: 415 DAAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVF 564
++A A LK+NV IKCATITPDE RV+EF LK MW SPNGTIRNIL GTVF
Sbjct: 131 ESAEAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVF 180
>At5g49680.1 68418.m06151 cell expansion protein, putative similar to
SABRE [Arabidopsis thaliana] GI:719291
Length = 1378
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 289 EMTRIIWAKIKEKLIFPYVKLDCLYYDLGLPHRDATDDQVTIDAAHAILKHNV-GIKCAT 465
++ ++IW+ + + F V++D + YD +RD Q T + +L++ + KC T
Sbjct: 904 QINKVIWSMVLDGKTFAEVEIDNMIYDFNRDYRDIGIAQFT--TRYVVLRNCLPNAKCDT 961
Query: 466 I 468
+
Sbjct: 962 V 962
>At1g26140.1 68414.m03191 hypothetical protein
Length = 162
Score = 29.1 bits (62), Expect = 2.1
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 141 FYKVPRKNGRKERKKVVKICERT 209
F+K+PRK +K +K V +IC +T
Sbjct: 75 FFKIPRKLAKKMKKFVKRICGKT 97
>At3g20260.1 68416.m02566 expressed protein
Length = 437
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 366 IVKAVQLNIRENKLFLNLS---PNYAGHLISIHFNNWISSQNPL 244
++K ++ +I +FL + PN HL H NN ++S PL
Sbjct: 304 LIKVIESSILTFNVFLKMDKKKPNGGIHLFGNHNNNHVNSTTPL 347
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 27.1 bits (57), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 560 TVPPRMLRIVPFGLSHIFFSLNSSTLCSSG 471
T PPR + I+ G SH L+ +CS G
Sbjct: 11 TAPPRKVLIISAGASHSVALLSGDIVCSWG 40
>At5g53850.3 68418.m06693 haloacid dehalogenase-like hydrolase
family protein low similarity to enolase-phosphatase E-1
enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 418
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 459 TFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 331
TF D++F Y V +HL ++ T +TQ +K ++ + E+
Sbjct: 296 TFVTDVLFPYARENVGKHLNLTYHTA-ETQEDIKLLRAQVEED 337
>At5g53850.2 68418.m06691 haloacid dehalogenase-like hydrolase
family protein low similarity to enolase-phosphatase E-1
enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 507
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 459 TFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 331
TF D++F Y V +HL ++ T +TQ +K ++ + E+
Sbjct: 280 TFVTDVLFPYARENVGKHLNLTYHTA-ETQEDIKLLRAQVEED 321
>At5g53850.1 68418.m06692 haloacid dehalogenase-like hydrolase
family protein low similarity to enolase-phosphatase E-1
enzyme [Klebsiella oxytoca] GI:401712; contains InterPro
accession IPR005834: Haloacid dehalogenase-like
hydrolase
Length = 402
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = -1
Query: 459 TFDADIMFQYGVSRVNRHLIVSSVTVRQTQIIVKAVQLNIREN 331
TF D++F Y V +HL ++ T +TQ +K ++ + E+
Sbjct: 280 TFVTDVLFPYARENVGKHLNLTYHTA-ETQEDIKLLRAQVEED 321
>At1g49810.1 68414.m05585 sodium hydrogen antiporter, putative
similar to NhaD [Vibrio parahaemolyticus]
gi|3123728|dbj|BAA25994; Na+/H+ aniporter (NhaD) family
member, PMID:11500563
Length = 420
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 561 YSPTEDVTNCSIWTQPHLFQFELFNSLFIRS 469
++P DVT +W H+ F +LF+ S
Sbjct: 150 WTPIGDVTTTMLWIHGHISTFSTIKNLFLPS 180
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,260,342
Number of Sequences: 28952
Number of extensions: 247323
Number of successful extensions: 594
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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