Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B01
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    53   2e-08
SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    25   9.3  

>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
 Frame = +3

Query: 9   IQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIV-AAKSPEIK 158
           I ++PG+ L+   D LGQ Y TPE+VI+  G+D+++VGRG+  A ++P ++
Sbjct: 195 ITMSPGIGLDVKGDGLGQQYRTPEEVIVNCGSDIIIVGRGVYGAGRNPVVE 245


>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 392 LVIGFHVGKSVISSKHIPSIFK 457
           +VI F +G  +    HIPS+ K
Sbjct: 527 IVIAFFIGYKIYDRSHIPSLSK 548


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,807
Number of Sequences: 5004
Number of extensions: 33017
Number of successful extensions: 81
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)