Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B01
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0191 + 41885121-41885909,41886152-41886190,41886701-418867...    62   2e-10
01_07_0190 + 41880032-41880319,41880501-41880521,41880992-418810...    62   2e-10
09_04_0373 - 17037945-17040641                                         27   7.1  
02_05_0866 - 32331629-32334328                                         27   9.4  

>01_07_0191 +
           41885121-41885909,41886152-41886190,41886701-41886784,
           41887331-41887413,41887501-41887588,41887736-41887990,
           41888275-41888403
          Length = 488

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +3

Query: 9   IQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIVAAKSP 149
           I  TPGVQL +  DSLGQ YNTP  VI + G+D+++VGRGI+ A +P
Sbjct: 422 IHATPGVQLVAGGDSLGQQYNTPYSVINDRGSDIIIVGRGIIRANNP 468


>01_07_0190 +
           41880032-41880319,41880501-41880521,41880992-41881075,
           41881177-41881259,41881341-41881428,41881545-41881799,
           41882530-41882658
          Length = 315

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +3

Query: 9   IQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIVAAKSP 149
           I  TPGVQ+ S  D+LGQ YNTP  VI + G+D+++VGRGI+ A +P
Sbjct: 249 IHATPGVQMVSGGDALGQQYNTPHSVINDRGSDIIIVGRGIIKASNP 295


>09_04_0373 - 17037945-17040641
          Length = 898

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 75  PEKVILENGADVVVVGRGIVAAKSPEIKLLFTEM 176
           PE ++L NG  V +   G+    S E   LFT M
Sbjct: 667 PENILLANGGQVKISDFGLAKLMSREQSALFTTM 700


>02_05_0866 - 32331629-32334328
          Length = 899

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 75  PEKVILENGADVVVVGRGIVAAKSPEIKLLFTEM 176
           PE ++L +G  V +   G+    +PE   LFT M
Sbjct: 657 PENILLADGGQVKIADFGLAKLLTPEQSGLFTTM 690


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,313,700
Number of Sequences: 37544
Number of extensions: 163288
Number of successful extensions: 368
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 368
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)