Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B01
         (530 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    60   1e-09
SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 28   5.4  
SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 25/49 (51%), Positives = 37/49 (75%)
 Frame = +3

Query: 3   GLIQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIVAAKSP 149
           G + +TPGV+L    D+LGQ Y TPE+V+ + G+DV++VGRGI  A++P
Sbjct: 405 GFVHMTPGVKLIKGGDALGQQYLTPEEVVGKKGSDVIIVGRGIYEAENP 453


>SB_52529| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 415

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 11/61 (18%)
 Frame = -2

Query: 157 LISGLFAATIPRPTTTTSAP-----------FSRITFSGVL*T*PRLSLELSSCTPGVNC 11
           L++GLF AT+   T+  SA            F R T S  L +  +LS  L S  PG++C
Sbjct: 20  LLNGLFIATLLSETSLRSASSGIIASIALDDFLRTTMSSPLASYGQLSKALHSSDPGISC 79

Query: 10  I 8
           I
Sbjct: 80  I 80


>SB_26943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 146 TLCRNNPTANNYNISTILKNHFLRCIINLTKTILRTFELYT 24
           T+C + PT  + +  T + NH L  + N T T +    L T
Sbjct: 40  TICNHKPTTIHSHTLTTMYNHILTTMCNHTLTAMCNHTLTT 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,667,125
Number of Sequences: 59808
Number of extensions: 213401
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)