Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B01
         (530 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical pr...    42   2e-04
Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical p...    42   2e-04

>Z35641-4|CAA84708.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +3

Query: 6   LIQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIVAAKSP 149
           L+  TPGV L++  DS GQ +   ++ I     D+++VGRG+ ++  P
Sbjct: 428 LLNWTPGVNLDAKSDSAGQQWRGVDEAIEVQQNDIIIVGRGVTSSSEP 475


>Z29443-13|CAA82579.1|  497|Caenorhabditis elegans Hypothetical
           protein T07C4.1 protein.
          Length = 497

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = +3

Query: 6   LIQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIVAAKSP 149
           L+  TPGV L++  DS GQ +   ++ I     D+++VGRG+ ++  P
Sbjct: 428 LLNWTPGVNLDAKSDSAGQQWRGVDEAIEVQQNDIIIVGRGVTSSSEP 475


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,836,761
Number of Sequences: 27780
Number of extensions: 172957
Number of successful extensions: 484
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)