Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_B01
         (530 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP...    64   6e-11
At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to cyto...    31   0.64 
At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C...    29   2.6  
At5g17380.1 68418.m02038 pyruvate decarboxylase family protein s...    27   6.0  
At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containi...    27   7.9  

>At3g54470.1 68416.m06026 uridine 5'-monophosphate synthase / UMP
           synthase (PYRE-F) (UMPS) identical to SP|Q42586 Uridine
           5'-monophosphate synthase (UMP synthase) [Includes:
           Orotate phosphoribosyltransferase (EC 2.4.2.10)
           (OPRtase); Orotidine 5'- phosphate decarboxylase (EC
           4.1.1.23) (OMPdecase)] {Arabidopsis thaliana}
          Length = 476

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 26/48 (54%), Positives = 36/48 (75%)
 Frame = +3

Query: 6   LIQLTPGVQLESSKDSLGQVYNTPEKVILENGADVVVVGRGIVAAKSP 149
           +I  TPGVQ+    D+LGQ YNTP  VI E G+D+++VGRGI+ A++P
Sbjct: 408 MIHATPGVQMVKGGDALGQQYNTPHSVITERGSDIIIVGRGIIKAENP 455


>At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to
            cytochrome P450 71B10 (SP:Q9LVD2) [Arabidopsis thaliana]
          Length = 1483

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
 Frame = -2

Query: 307  LFNSMYNIGIYKLQFFYIITINSNLSKTIILIFQKLF*HNISKGISVN----NSLISG 146
            LF+S+ NIG+   +  Y I I++   + + L  +KL    +SKG+  N    NS++ G
Sbjct: 1224 LFDSLENIGLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDG 1281


>At5g59220.1 68418.m07422 protein phosphatase 2C, putative / PP2C,
           putative ABA induced protein phosphatase 2C, Fagus
           sylvatica, EMBL:FSY277743
          Length = 413

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +3

Query: 57  GQVYNTPEKVILENGADVVVVGRGIVAAKS-PEIKLLFTEMPL 182
           GQV ++PE+ +   GA  VVVG G +  K+  E  LL T + L
Sbjct: 352 GQVSSSPEREMTGVGAGNVVVGGGDLPDKACEEASLLLTRLAL 394


>At5g17380.1 68418.m02038 pyruvate decarboxylase family protein
           similar to 2-hydroxyphytanoyl-CoA lyase [Homo sapiens]
           GI:6273457; contains InterPro entry IPR000399: Pyruvate
           decarboxylase
          Length = 572

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +3

Query: 75  PEKVILENGADVVVVGRGIVAAKSPEIKL 161
           P  V++  GA+ + VGR ++  K P  +L
Sbjct: 396 PSPVVVSEGANTMDVGRSVLVQKEPRTRL 424


>At1g09410.1 68414.m01052 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 705

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 208 QKLF*HNISKGISVNNSLISGLFAATIPR 122
           +KLF    SK IS  NS+++G FA  +PR
Sbjct: 37  RKLFDSCDSKSISSWNSMVAGYFANLMPR 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,022,713
Number of Sequences: 28952
Number of extensions: 152744
Number of successful extensions: 333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)