Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A24
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase |S...    32   0.042
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    29   0.29 
SPAC6G9.03c |mug183||histone chaperone Rtt106-like|Schizosacchar...    27   1.6  
SPAPB24D3.01 ||SPAPB2C8.02|transcription factor |Schizosaccharom...    26   2.7  
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    26   2.7  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   6.3  
SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces p...    25   6.3  

>SPCC1235.15 |dga1|SPCC548.01|diacylglycerol O-acyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 32.3 bits (70), Expect = 0.042
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
 Frame = +3

Query: 156 QLFKQTQIHTVADRFMFRIPGWSMLLENLCVIPGTVQTCASVL--KNGNSLAISPGGVYE 329
           +LF    +  +     F +P +   L  L +   + ++C S+L  K G+S+ I  GG  E
Sbjct: 141 KLFPGINVSVLTLNSNFYVPVYRDYLMALNINSVSKKSCVSILSRKPGDSVLIVIGGAQE 200

Query: 330 AQFG-DHYYRLNWKTRIGFAKVALEAKVPIVPMFTQNVREAFRTV 461
           +         L  K R GF K+A      +VP F     + F  V
Sbjct: 201 SLLSRPGQNNLVLKKRFGFVKLAFLTGSSLVPCFAFGESDIFEQV 245


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 29.5 bits (63), Expect = 0.29
 Identities = 17/68 (25%), Positives = 27/68 (39%)
 Frame = +3

Query: 39  WLWHGYEIRGLENLPDGPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPG 218
           W W GY I+G +  P G   ++    A+ V  Y + +   +     +      FM+   G
Sbjct: 496 WSWDGYPIKGPQPYPHGAVSIVVSICAVLVAPYLYQSGAFMLIGFVLACFGSYFMYINHG 555

Query: 219 WSMLLENL 242
           W   L  L
Sbjct: 556 WCSYLGGL 563


>SPAC6G9.03c |mug183||histone chaperone
           Rtt106-like|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 272 ASLHGSRDNA*ILEEHRPSRYTKHESVSYSMDLSLLE*LHSCDEIIHIDRQSSVIVDNE 96
           A+ HG  D++  L E + +   K+ SVSY  + S LE   + D++  ID +  +  DN+
Sbjct: 278 ATKHGLMDSS--LAEEKAAPVPKNPSVSYLNEASSLE---NVDDMDDIDVKEPLFSDND 331


>SPAPB24D3.01 ||SPAPB2C8.02|transcription factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 79  CQTVRISLSTITELCLSICIISSHECNYSSRLK 177
           C+  +I  +     C + CI+   EC+YS RLK
Sbjct: 14  CRRKKIRCNRELPSCQN-CIVYQEECHYSKRLK 45


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
 Frame = +3

Query: 312 PGGVYEAQFGDHYYRLNWKT--RIGFAKVALEAKVPIVPMFTQNVREAFR 455
           PGG  E   G HYY    +T   IGF            P+FT++ +   R
Sbjct: 151 PGGRVEPSDGSHYYAALRETYEEIGFLPNFFTYLTTFPPLFTRDEKTEIR 200


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 268 VCTVPGITHRFSRS 227
           VCT PG   RFSRS
Sbjct: 55  VCTFPGCAKRFSRS 68


>SPAC3A11.10c |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/40 (30%), Positives = 16/40 (40%)
 Frame = -2

Query: 494 VYPQPDTAQPTHSSECLAHVLREHWHYRHFSLEGHFSEAD 375
           + P P+ A      E + H+      YRH  L G F   D
Sbjct: 308 ISPHPENATIDTVVEHIMHIANVTGSYRHIGLGGDFDGID 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,331
Number of Sequences: 5004
Number of extensions: 41796
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)