Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A24
(498 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0507 - 29617998-29618099,29618299-29618386,29618470-296185... 54 5e-08
06_02_0178 + 12652654-12652877,12652964-12653140,12653141-126532... 52 3e-07
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166... 44 7e-05
01_03_0292 - 14738016-14738316,14738570-14738655,14739002-147391... 36 0.018
01_03_0289 - 14725832-14726114,14726216-14726298,14726432-147265... 36 0.024
10_08_0507 + 18401266-18401341,18401448-18401633,18401918-184019... 33 0.17
12_01_0539 - 4245733-4246149,4246406-4246519 28 3.6
02_05_0409 - 28723534-28724646 28 3.6
01_06_1411 + 37127098-37128279 28 3.6
06_03_0611 - 22721977-22722276,22722765-22722853,22722978-227230... 28 4.8
06_03_0551 - 22027441-22028224,22029015-22029344,22029510-220297... 28 4.8
04_04_0081 + 22601090-22601395,22601714-22602522,22602584-22602611 28 4.8
07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619 27 8.4
>02_05_0507 -
29617998-29618099,29618299-29618386,29618470-29618567,
29618680-29618766,29618887-29619042,29619228-29619334,
29619621-29619706,29619796-29619870,29619987-29620204
Length = 338
Score = 54.4 bits (125), Expect = 5e-08
Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 2/118 (1%)
Frame = +3
Query: 81 PDGPYLVIYY-HGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPGWSMLLENLCVIPG 257
P+ Y+ Y H LP+ + + + +I +A +F P + L ++P
Sbjct: 122 PNRAYVFGYEPHSVLPIALGVLLELVGFMPLPKIKVLASSAVFYTPFLRQIWTWLGLVPA 181
Query: 258 TVQTCASVLKNGNSLAISPGGVYEAQFGDHYYRLNW-KTRIGFAKVALEAKVPIVPMF 428
+ + S LK G S I PGGV E DH + + K+R GF K+A+E P+VP+F
Sbjct: 182 SRKNFYSYLKAGYSCVIVPGGVQEMLHMDHDSEVAFLKSRKGFVKIAMETGSPLVPVF 239
>06_02_0178 +
12652654-12652877,12652964-12653140,12653141-12653214,
12653424-12653530,12653637-12653792,12653933-12654019,
12654247-12654344,12654467-12654554,12654810-12654911
Length = 370
Score = 52.0 bits (119), Expect = 3e-07
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 1/107 (0%)
Frame = +3
Query: 111 HGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPGWSMLLENLCVIPGTVQTCASVLKN 290
H LP+ + + +I +A +F P + L +IP T + S L
Sbjct: 165 HSVLPIGVAALADLVGFMPLPKIKVLASSAVFYTPFLRQIWTWLGLIPATRKNFQSYLGA 224
Query: 291 GNSLAISPGGVYEAQFGDHYYRLNW-KTRIGFAKVALEAKVPIVPMF 428
G S I PGGV E DH + + K+R GF K+A+++ P+VP+F
Sbjct: 225 GYSCIIVPGGVQEILHMDHDSEIAFLKSRKGFVKIAMQSGCPLVPVF 271
>01_03_0288 -
14714953-14715253,14716317-14716402,14716573-14716686,
14716771-14717140,14717224-14717357,14717512-14717617,
14717733-14717854,14718125-14718231,14718522-14718622,
14719007-14719169,14719559-14719614,14720833-14721152
Length = 659
Score = 44.0 bits (99), Expect = 7e-05
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 11/138 (7%)
Frame = +3
Query: 42 LWHGYEIRGLENLPD-GPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPG 218
L +G +RGL +PD GP L++ YH L +++ K+ + T+A F +
Sbjct: 384 LRNGKIVRGLAGVPDKGPVLLVGYHQLLAMEITSMAEEFLREKKAVLRTLAHPVFF-VGN 442
Query: 219 WSMLLENLC---VIP--GTVQTCA----SVLKNGNSLAISPGGVYEAQFG-DHYYRLNWK 368
+ +L + L V+P G VQ + + + + PGG+ EA D Y+L W
Sbjct: 443 YEILRQELSFFDVVPLYGGVQVSPINTYRLFERDEFVLLYPGGIREALHRKDEDYQLFWP 502
Query: 369 TRIGFAKVALEAKVPIVP 422
+ F ++A + V ++P
Sbjct: 503 DQPEFVRMAAQFGVTVIP 520
>01_03_0292 -
14738016-14738316,14738570-14738655,14739002-14739115,
14739299-14739668,14739769-14739977,14740037-14740145,
14740257-14740378,14740873-14740979,14741393-14741447
Length = 490
Score = 35.9 bits (79), Expect = 0.018
Identities = 34/137 (24%), Positives = 57/137 (41%), Gaps = 10/137 (7%)
Frame = +3
Query: 42 LWHGYEIRGLENLPD-GPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPG 218
L +G +RGL +PD GP L + YH + +++ K+T +A +F
Sbjct: 215 LKNGKIVRGLTGVPDQGPVLFVGYHALMGIELSPLYEEFLREKRTSFRGMAHPILFGGKH 274
Query: 219 WSMLLE-----NLCV---IPGTVQTCASVLKNGNSLAISPGGVYEA-QFGDHYYRLNWKT 371
S E + + +P T + + + + PGGV EA Y+L W
Sbjct: 275 ESSRQELSRFDTISMYGGLPVTAINMYRLFERNQFVLLYPGGVREALHRKGEAYKLFWPD 334
Query: 372 RIGFAKVALEAKVPIVP 422
+ F ++A V I+P
Sbjct: 335 QPEFVRMAARFGVTIIP 351
>01_03_0289 -
14725832-14726114,14726216-14726298,14726432-14726545,
14727830-14728199,14728726-14728856,14728970-14729078,
14729257-14729378,14729522-14729625,14729849-14729953,
14730034-14730192,14730336-14730391,14730576-14730627,
14730725-14731031
Length = 664
Score = 35.5 bits (78), Expect = 0.024
Identities = 33/134 (24%), Positives = 55/134 (41%), Gaps = 10/134 (7%)
Frame = +3
Query: 51 GYEIRGLENLPD-GPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMF--RIPGW 221
G +RGL +P+ GP L++ H L +++ K + +A +F + W
Sbjct: 399 GVVVRGLAGVPEEGPVLLVGNHMLLGIELISLATEFLRRKGRVLRGIAHPLLFPNKTKTW 458
Query: 222 SM------LLENLCVIPGTVQTCASVLKNGNSLAISPGGVYEA-QFGDHYYRLNWKTRIG 380
S L +P T + +L G + + PGG EA +RL W +
Sbjct: 459 SEGHDFFDFLNLWGGVPMTYKYIYQLLAAGEFVLLYPGGHREALHCKGEEHRLFWPDQTE 518
Query: 381 FAKVALEAKVPIVP 422
F ++A + IVP
Sbjct: 519 FVRMAAQFNATIVP 532
>10_08_0507 +
18401266-18401341,18401448-18401633,18401918-18401953,
18402244-18402650,18402998-18403099,18403206-18403433
Length = 344
Score = 32.7 bits (71), Expect = 0.17
Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 12/105 (11%)
Frame = +3
Query: 42 LWHGYEIRGLENLP--DGPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIP 215
+++ ++ G+ENLP P + + H + +D+Y + + FK ++ FMF I
Sbjct: 159 MFYKLDVEGMENLPPNSSPAVYVANHQSF-LDIYTLLTLGRCFKFISKTSI---FMFPII 214
Query: 216 GWSMLLENLCVIP----------GTVQTCASVLKNGNSLAISPGG 320
GW+M L L VIP ++ C ++K G S+ P G
Sbjct: 215 GWAMYL--LGVIPLRRMDSRSQLDCLKRCVDLVKKGASVFFFPEG 257
>12_01_0539 - 4245733-4246149,4246406-4246519
Length = 176
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +3
Query: 33 HGWLWHGYEIRGLENLPDGPYLVIYYHGALPVD 131
HG++ GY + G+ +P+ LV YH D
Sbjct: 118 HGFVDGGYRLNGIHGIPEHGTLVAIYHSQPTAD 150
>02_05_0409 - 28723534-28724646
Length = 370
Score = 28.3 bits (60), Expect = 3.6
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = +3
Query: 57 EIRGLENLPDGPYLVIYYHGALPV--DMYYFVARMQLFKQTQIHTVADRFMFRIPGWSML 230
E R NLP+ P + G LP +Y F A Q +++ + AD RIP +L
Sbjct: 6 EFRDWANLPELPLSEVL-RGLLPCLRSVYAFAAACQPWRRLLRDSAADLVRPRIPPLLLL 64
Query: 231 LENLCVIPGTVQTCASVLKN 290
V+P + A++L +
Sbjct: 65 CPTYRVVPFSQLVVAALLSS 84
>01_06_1411 + 37127098-37128279
Length = 393
Score = 28.3 bits (60), Expect = 3.6
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +3
Query: 213 PGWSMLLENLCVIPGTVQTCASVLKNGNSLAISPGGVYEAQFGDHYYRLNWKTRIGFA 386
PG L +L +PG + +CA V +G L S G + ++ +RLN GFA
Sbjct: 149 PGVLRNLPSLLSLPGRIPSCAVVGNSGILLGASHGALIDSHAA--VFRLNNARISGFA 204
>06_03_0611 -
22721977-22722276,22722765-22722853,22722978-22723083,
22723178-22723306,22723803-22723887,22723994-22724103,
22724424-22724624,22725033-22725394,22725612-22725695,
22725791-22725916,22725999-22726161,22726378-22726536,
22727147-22727274,22727371-22727493,22727755-22727899,
22727992-22728068,22728318-22728696,22729325-22729411
Length = 950
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 69 LENLPDGPYLVIYYHGALPVDMYYFV 146
+ L DGPY +IYY L + M Y V
Sbjct: 386 MHGLGDGPYWIIYYAYFLILSMVYLV 411
>06_03_0551 -
22027441-22028224,22029015-22029344,22029510-22029778,
22030530-22031453,22037761-22038360,22040049-22040267
Length = 1041
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -2
Query: 158 LHSCDEIIHIDRQSSVIVDNEIRTVWQVLQPANLVT 51
+ C EI+H DR +I + + W + ANL+T
Sbjct: 194 IQQCREILHRDRCLVIIDEVHSKEDWDSITDANLIT 229
>04_04_0081 + 22601090-22601395,22601714-22602522,22602584-22602611
Length = 380
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 183 TVADRFMFRIPGWSMLLE-NLCVIPGTVQTCASV 281
T+ + F RIPGW + L +PGT+ S+
Sbjct: 136 TITNYFTNRIPGWGWRVSLGLAAVPGTIIVAGSL 169
>07_01_1084 + 9885562-9885696,9885762-9886220,9886269-9886619
Length = 314
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 220 GRCSSRIYALSREPC-RLARRSLRTV 294
GRCS+ +L +PC RL++R L T+
Sbjct: 26 GRCSNPCRSLPTDPCERLSQRRLETI 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,234,617
Number of Sequences: 37544
Number of extensions: 284439
Number of successful extensions: 774
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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