Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A24
(498 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39) 44 7e-05
SB_58134| Best HMM Match : DAGAT (HMM E-Value=0) 34 0.057
SB_51700| Best HMM Match : DUF1225 (HMM E-Value=7.2) 30 1.2
SB_53579| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_15366| Best HMM Match : rve (HMM E-Value=0.00011) 28 4.9
SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_27320| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_5338| Best HMM Match : rve (HMM E-Value=0.0034) 27 8.6
SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021) 27 8.6
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_4046| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
>SB_16725| Best HMM Match : DAGAT (HMM E-Value=1e-39)
Length = 571
Score = 44.0 bits (99), Expect = 7e-05
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Frame = +3
Query: 291 GNSLAISPGGVYEAQFG-DHYYRLNWKTRIGFAKVALEAKVPIVPM--FTQN--VREAFR 455
G+S+ + GG E + Y L K R GFAK+ALE P+VPM F QN + + F
Sbjct: 343 GHSVIVVVGGAAEMMNAKEGLYALTLKNRKGFAKLALETGSPLVPMIAFGQNDVMSQLFN 402
Query: 456 TVG---WLRGVWLR 488
T+G W +WLR
Sbjct: 403 TMGSRFWHFNLWLR 416
>SB_58134| Best HMM Match : DAGAT (HMM E-Value=0)
Length = 288
Score = 34.3 bits (75), Expect = 0.057
Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 2/106 (1%)
Frame = +3
Query: 177 IHTVADRFMFRIPGWSMLLENLCVIPG-TVQTCASVLKNGNSLAISPGGVYEA-QFGDHY 350
I T+A F + M+ +C + ++ + G++ I GG E+
Sbjct: 143 ILTLAGNMKFPVTRDYMMAFGVCTVEKESIHHIMERMGKGHAAVIVTGGAAESLDAHPGS 202
Query: 351 YRLNWKTRIGFAKVALEAKVPIVPMFTQNVREAFRTVGWLRGVWLR 488
+++ K R GF K+A++ +VP+F+ E + V RG +R
Sbjct: 203 FKITLKERKGFVKIAMKTGASLVPVFSFGENELYSQVDNPRGSSIR 248
>SB_51700| Best HMM Match : DUF1225 (HMM E-Value=7.2)
Length = 121
Score = 29.9 bits (64), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 12 ICALWDAHGWLWHGYEIRGLENLPDGPYLVIYYHGALPVDM 134
+ A+ DAHG WHG+ +R L P + +Y G PV M
Sbjct: 58 VAAVVDAHGEFWHGF-LRKLYEWTKLPLVPLY--GGFPVKM 95
>SB_53579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 28.3 bits (60), Expect = 3.7
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 387 KVALEAKVPIVPMFTQNVREAFRTVGWLR 473
K A A +P M T RE F TVGW+R
Sbjct: 286 KTAWRALIPGSSMQTYCNREGFNTVGWVR 314
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +1
Query: 121 CLSICIISSHECNYSSRLKSIL*LTDSCFVYLDGRCSSRIYALSREPCRLARRSLRTVT 297
C +C+ISS++ YS L F+ LDG+ S+I + P LA ++ T T
Sbjct: 933 CSHLCLISSNKNKYSCNCPKDL------FLQLDGKICSKIKPPTTLPTALASSTVATDT 985
>SB_15366| Best HMM Match : rve (HMM E-Value=0.00011)
Length = 1178
Score = 27.9 bits (59), Expect = 4.9
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +1
Query: 316 AVFTRRSSAITTIGSTGKQGSASLKWPSRLKCR*CQCSRRTCARHSEL 459
AV+TR++S +T G+Q S + PSR QC R + R+ L
Sbjct: 437 AVWTRKTSHLTLSSRPGRQLSEAYDQPSRHGASDRQCGRSSQWRNVRL 484
>SB_1872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1801
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = +1
Query: 145 SHECNYSSRLKSIL*LTDSCFVYLDGRCSSRIYALSREPCRLARRSLRTVTR*RYHPAVF 324
+H +++ +L L + +++GRCS A++R+ + + L + PA+F
Sbjct: 1229 AHYTIQPNQVNELLDLVNDLVAFVEGRCSGEETAVNRQTALYSLKLLARLLA-EQEPAIF 1287
Query: 325 TR 330
T+
Sbjct: 1288 TK 1289
>SB_27320| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 137 IHIDRQSSVIVDNEIRTVWQVLQ 69
+H D S I++NE+RT+W L+
Sbjct: 643 LHNDLVSDYIINNELRTLWMNLK 665
>SB_5338| Best HMM Match : rve (HMM E-Value=0.0034)
Length = 537
Score = 27.1 bits (57), Expect = 8.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -2
Query: 137 IHIDRQSSVIVDNEIRTVWQ 78
+H D S I++NE+RT+W+
Sbjct: 48 LHNDLVSDYIINNELRTLWE 67
>SB_3226| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=0.021)
Length = 1217
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +2
Query: 224 DAPRESMRYPGNRADLRVGP 283
DAPRE R PG+R R GP
Sbjct: 901 DAPREEWRRPGDRDGPRDGP 920
>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 223 RCSSRIYALSREPCRLARRSLRTVTR-*RYHPAVFTR--RSSAITTIGSTGKQGSASLKW 393
+CS + ++E CR+A + T+T+ RY A TR R S + ST S+ W
Sbjct: 2198 KCSENVSRKAQEHCRVAPYMVCTLTKSCRYQTATRTRTVRLSKASNENSTSPTLIYSVNW 2257
Query: 394 PS 399
S
Sbjct: 2258 RS 2259
>SB_4046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -3
Query: 307 IASELPFLRTDAQVCTVPGITHRFSRSIDHPGIRNMNL 194
I S+ P+ A C + + ++ +DH G R +NL
Sbjct: 21 IRSQTPYPLGHAVTCLIITMVYKMKLYVDHEGTRTLNL 58
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,819,147
Number of Sequences: 59808
Number of extensions: 347369
Number of successful extensions: 1013
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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