Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A24
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    24   1.0  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   1.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   3.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   5.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.4  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 445 SRTFCVNIGTIGTLA-SRATLAKPI 374
           SR   +NIGTIG +A  ++T+ K I
Sbjct: 38  SRQATINIGTIGHVAHGKSTIVKAI 62


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 255 GTVQTCASVLKNGNSLAISPG 317
           GT QT   V  NG+ L + PG
Sbjct: 85  GTYQTSVVVTHNGSCLYVPPG 105


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 255 GTVQTCASVLKNGNSLAISPG 317
           GT QT   V  NG+ L + PG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPG 173


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 255 GTVQTCASVLKNGNSLAISPG 317
           GT QT   V  NG+ L + PG
Sbjct: 153 GTYQTNVVVTHNGSCLYVPPG 173


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 20  TMGCTRLAMAWLRDSRAGEPA 82
           T G   L+++WL+D RA  P+
Sbjct: 635 TRGDLPLSISWLKDGRAMGPS 655



 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 174  QIHTVADRFMFRIPGWSMLLENLCVIPGTVQTCASVLKNGN 296
            QI T + R +  +P   ++L NL    G   TC      GN
Sbjct: 1348 QIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGN 1388


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -2

Query: 194 VSYSMDLSLLE*LHSCDEIIHIDRQSSVIVDNEIRTVWQVLQPANLVT 51
           + YS+ LSLL     C   +H   + S + D  I T   V+      T
Sbjct: 1   MKYSILLSLLITCLICSPSVHCGTRPSFVSDEMIATAASVVNACQTQT 48


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 204 FRIPGWSMLLENLCVIPGTVQTCASVLKNGNSLAI-SPGGVY 326
           F   G+   L+N  ++   VQ C  + K  N+L + +  GV+
Sbjct: 786 FHESGFMESLDNHWILRSNVQQCEQLEKAPNTLGLKNMAGVF 827


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 54  YEIRGLENLPDGPYLVIYYHGAL 122
           Y+I    +    P +V+YY GA+
Sbjct: 59  YDIESNSHQYKNPIIVMYYAGAV 81


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 174  QIHTVADRFMFRIPGWSMLLENLCVIPGTVQTCASVLKNGN 296
            QI T + R +  +P   ++L NL    G   TC      GN
Sbjct: 1352 QIRTDSTRNIQILPSGELMLSNLQSQDGGDYTCQVENAQGN 1392


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,656
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)