Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A24
         (498 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26840.1 68416.m03357 esterase/lipase/thioesterase family pro...    39   0.002
At3g51520.1 68416.m05642 diacylglycerol acyltransferase family c...    38   0.004
At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family prote...    33   0.14 
At4g21370.1 68417.m03088 S-locus protein kinase, putative simila...    31   0.57 
At1g33410.1 68414.m04136 expressed protein                             27   5.3  
At3g26820.1 68416.m03355 esterase/lipase/thioesterase family pro...    27   7.0  
At3g08810.1 68416.m01023 kelch repeat-containing F-box family pr...    27   7.0  
At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xy...    27   9.3  
At1g02650.1 68414.m00215 DNAJ heat shock N-terminal domain-conta...    27   9.3  

>At3g26840.1 68416.m03357 esterase/lipase/thioesterase family
           protein contains Pfam profile PF03096: Ndr family
          Length = 701

 Score = 38.7 bits (86), Expect = 0.002
 Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
 Frame = +3

Query: 51  GYEIRGLENLP-DGPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPGWSM 227
           G  +R LE LP +GP L + YH  L  ++   V ++   +   +  +A   +F+    S+
Sbjct: 430 GTVVRSLEGLPSEGPVLYVGYHMILGFELAPMVIQLMTERNIHLRGLAHPMLFKNLQDSL 489

Query: 228 ----LLENLCVIPGTVQTCASV---LKNGNSLAISPGGVYEA--QFGDHYYRLNWKTRIG 380
               + +   ++ G   +  ++   L+    + + PGGV EA  + G+ Y +L W  R  
Sbjct: 490 VDTKMFDKYKIMGGVPVSHFNIYKLLREKAHVLLYPGGVREALHRKGEEY-KLFWPERSE 548

Query: 381 FAKVALEAKVPIVP 422
           F +VA +    IVP
Sbjct: 549 FVRVASKFGAKIVP 562


>At3g51520.1 68416.m05642 diacylglycerol acyltransferase family
           contains Pfam PF03982: Diacylglycerol acyltransferase
          Length = 314

 Score = 37.9 bits (84), Expect = 0.004
 Identities = 30/118 (25%), Positives = 49/118 (41%), Gaps = 2/118 (1%)
 Frame = +3

Query: 81  PDGPYLVIYY-HGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPGWSMLLENLCVIPG 257
           P+  Y+  Y  H  LP+ +              I  +A   +F  P    +   L +   
Sbjct: 99  PNRAYVFGYEPHSVLPIGVVALCDLTGFMPIPNIKVLASSAIFYTPFLRHIWTWLGLTAA 158

Query: 258 TVQTCASVLKNGNSLAISPGGVYEAQFGDH-YYRLNWKTRIGFAKVALEAKVPIVPMF 428
           + +   S+L +G S  + PGGV E     H    +    R GF ++A+E   P+VP+F
Sbjct: 159 SRKNFTSLLDSGYSCVLVPGGVQETFHMQHDAENVFLSRRRGFVRIAMEQGSPLVPVF 216


>At3g02030.1 68416.m00166 hydrolase, alpha/beta fold family protein
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family; contains non-consensus splice site (GC) at
           intron 10
          Length = 565

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 11/135 (8%)
 Frame = +3

Query: 51  GYEIRGLENLP-DGPYLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFR------ 209
           G  +RGL  +P +GP L++  H  L  D      +    +   +  +    MF       
Sbjct: 409 GKVVRGLGGIPSEGPVLLVGNHMLLASDKISLPGQFVHERNINLRPLVHPMMFSRLRDGL 468

Query: 210 IPGWSM--LLENLCVIPGTVQTCASVLKNGNSLAISPGGVYEA--QFGDHYYRLNWKTRI 377
           +P  S+  +L  +  +P +     ++L   + + + PGG+ EA  + G+ Y +L W  + 
Sbjct: 469 LPDVSVYDMLRMMGSVPISGTHLHNLLSAKSHILLFPGGIREALHRKGEEY-KLMWPEKA 527

Query: 378 GFAKVALEAKVPIVP 422
            F + A +    IVP
Sbjct: 528 EFVRAAAKFGAKIVP 542


>At4g21370.1 68417.m03088 S-locus protein kinase, putative similar
           to SRKa [Arabidopsis lyrata] gi|13620927|dbj|BAB40986;
           contains Pfam domains PF00954: S-locus glycoprotein
           family, PF00069: Protein kinase domain and PF01453:
           Lectin (probable mannose binding)
          Length = 844

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +3

Query: 225 MLLENLCVIPGTVQTCASVLKNGNSLAISPGGVYEAQF----GDHYYRLNWKTRI 377
           +L  +L +   T+    S+  + N   +SPGGV+E  F    GD +Y   W  +I
Sbjct: 23  ILFPDLSISVNTLSATESLTISSNKTIVSPGGVFELGFFRILGDSWYLGIWYKKI 77


>At1g33410.1 68414.m04136 expressed protein
          Length = 1459

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 197  IHVSYTWMVDAPRESMRYPGNRA 265
            +H  Y W+   P E+ RYP  +A
Sbjct: 1135 VHPGYAWIDPVPEETTRYPVKKA 1157


>At3g26820.1 68416.m03355 esterase/lipase/thioesterase family
           protein contains Interpro entry IPR000379
          Length = 634

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 249 IPGTVQTCASVLKNGNSLAISPGGVYEA--QFGDHYYRLNWKTRIGFAKVALEAKVPIVP 422
           +P +      +L+    + + PGGV EA  + G+ Y +L W  +  F +VA +    IVP
Sbjct: 436 VPVSNMNFYKLLREKAHVLLYPGGVREALHRKGEEY-KLFWPEQSEFVRVASKFGAKIVP 494

Query: 423 MFTQNVREAFRTV 461
                  + F  V
Sbjct: 495 FGVVGEDDIFNIV 507


>At3g08810.1 68416.m01023 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 343

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +1

Query: 97  SLSTITELCLSICIISSHECNYSSRLKSIL*LTDSCFVYLDGRCSSRIYALSREP 261
           SLS  TE+CL +C+     C+   R  S+    D    Y + + S   YAL+R P
Sbjct: 67  SLSGNTEICLYVCL----RCSTGYRWFSLSRKPDQTLTYEERKSSG--YALARVP 115


>At4g33840.1 68417.m04802 glycosyl hydrolase family 10 protein xylan
           endohydrolase isoenzyme X-I, Hordeum
           vulgare,PID:g1813595
          Length = 576

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 48  HGYEIRGLENLPDGP-YLVIYYHGALPVDMYYFVARMQLFKQTQIHTVADRFMFRIPGWS 224
           HG  +RG   L D P Y   + +     D+Y  V R       ++++V  R+  ++ GW 
Sbjct: 285 HGIAVRGHNVLWDDPKYQPGWVNSLSGNDLYNAVKR-------RVYSVVSRYKGQLLGWD 337

Query: 225 MLLENL 242
           ++ ENL
Sbjct: 338 VVNENL 343


>At1g02650.1 68414.m00215 DNAJ heat shock N-terminal
           domain-containing protein contains Pfam profile PF00226:
           DnaJ domain
          Length = 513

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 436 FCVNIGTIGTLASRATLAKPILV 368
           FC ++  +G+L SRA L +PI V
Sbjct: 491 FCRDMAAVGSLISRAGLRQPITV 513


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,149,478
Number of Sequences: 28952
Number of extensions: 219489
Number of successful extensions: 594
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)