Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A23
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151... 29 1.5
07_03_1766 + 29334576-29335790,29335865-29336362 28 3.4
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 27 6.0
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 27 6.0
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883... 27 6.0
06_02_0335 - 14591512-14591772,14594021-14594215,14594379-145946... 27 6.0
07_01_0748 - 5735420-5735593,5735735-5735953,5736353-5736532,573... 27 7.9
02_02_0061 + 6468190-6471046,6471318-6471736 27 7.9
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 27 7.9
>09_04_0570 -
18614227-18614574,18614729-18614842,18614933-18615130,
18615290-18615463,18615546-18615752,18615886-18616180,
18616269-18617275
Length = 780
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/86 (20%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = -2
Query: 478 DLDAVPDNVSDPHSVQQAMEDNNLDSAITNSIENQTETHD-PVLDSSLNSQAATLTGNKD 302
D V DN +D S++ +D + + I +++ E + +LD + N +T T +
Sbjct: 174 DDTTVEDNTTDERSIESGTDDRTI-AGIAADVKSSEEAKEIDILDEAPNCDQSTAT--DE 230
Query: 301 DLDLVQDDVSYPHSVRQATKDDNLDS 224
++ ++ ++Y K + L+S
Sbjct: 231 EIADTEESIAYDGKSAAYEKSEELES 256
>07_03_1766 + 29334576-29335790,29335865-29336362
Length = 570
Score = 28.3 bits (60), Expect = 3.4
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = -2
Query: 388 SIENQT--ETHDPVLDSSLNSQAATLTGNKDDLDLVQDDVSYPHSVRQATKDDNLDSAIK 215
++EN E H V +L +Q+ + + D QD + YPH+ RQ +D + I
Sbjct: 339 TVENTAGPENHQAV---ALRAQSDMAVFYQCEFDGYQDTL-YPHAQRQFFRDCTVSGTID 394
Query: 214 SFIGNQTETHGLILESSL 161
GN + ++L++ L
Sbjct: 395 FIFGNSQASKIVVLQNCL 412
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -2
Query: 280 DVSYPHSVRQATKDDNLDSAIKSFI 206
+VS HSVR DD DS +K F+
Sbjct: 1372 EVSPQHSVRPKLSDDPSDSVLKDFV 1396
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 460 DNVSDPHSVQQAMEDNNLDSAI-TNSIENQTETHDPVLDSSLNSQAATLTGNKDDLD 293
D V++ + + +E N +D T +N E P+LDSS+ +AA + G K ++
Sbjct: 255 DQVNE-QTCSKNVEPNEIDDVKPTRGHKNTMEVVLPLLDSSVKRKAAEIDGEKVQIE 310
>08_02_1345 -
26286448-26286679,26287483-26288038,26288068-26288358,
26288953-26290516
Length = 880
Score = 27.5 bits (58), Expect = 6.0
Identities = 21/70 (30%), Positives = 34/70 (48%)
Frame = -2
Query: 310 NKDDLDLVQDDVSYPHSVRQATKDDNLDSAIKSFIGNQTETHGLILESSLNYQNATVTGK 131
NKD++DLVQ + + R + DN+ S + F+ E + SSL+ ++
Sbjct: 190 NKDEVDLVQRRIMFCDITRMCSDCDNI-SVLMIFVCLGCEKPFCTVHSSLHAEST----- 243
Query: 130 KHDLDAVPHN 101
KH + V HN
Sbjct: 244 KHLVGLVYHN 253
>06_02_0335 -
14591512-14591772,14594021-14594215,14594379-14594679,
14594930-14595051,14595287-14595466,14595514-14596337,
14596377-14596435,14596480-14597075
Length = 845
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -2
Query: 451 SDPHSVQQAMEDNNLDSAITNSIENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQD 281
S PHS+++ + S +S +++ TH S ++ A N DLDLV D
Sbjct: 590 SGPHSMRRRLSRLFKGSGSPSSRHDESSTHSSADVSKEDADAPRQLLNDADLDLVSD 646
>07_01_0748 -
5735420-5735593,5735735-5735953,5736353-5736532,
5736602-5736739,5736852-5737052,5737859-5737986,
5738114-5738189,5738354-5738503,5738594-5739115,
5739208-5739357,5739559-5739807,5740249-5740440,
5740890-5740937,5741589-5741717,5741821-5741935,
5742044-5742159,5742341-5742415,5742562-5742696
Length = 998
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/49 (26%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = -2
Query: 475 LDAVPDNVSDPHSVQQAMEDNNLDSAITNSIE-NQTETHDPVLDSSLNS 332
L AV D+V DP + + EDN ++IE +++++ + ++ + +N+
Sbjct: 708 LQAVKDSVDDPSKIYGSPEDNTNALKSLSAIELSESQSRECIVSTIMNN 756
>02_02_0061 + 6468190-6471046,6471318-6471736
Length = 1091
Score = 27.1 bits (57), Expect = 7.9
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Frame = -2
Query: 466 VPDNVSDPHSVQQ-AMEDNNLDSAITNSIENQTETHDPVLD-SSLNSQAATLTGNK 305
VPD + + +S++Q +E+N L+ ++ +SI N + + L ++LN GN+
Sbjct: 272 VPDTIGNLYSIKQFHVENNELEGSLPSSIFNLSSLEELNLQTNNLNGTIPLDLGNR 327
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 27.1 bits (57), Expect = 7.9
Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 6/102 (5%)
Frame = -2
Query: 460 DNVSDPHSVQQAMEDNNLDSAITNSIENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQD 281
+N SD + +Q E N D AI N + E +++S + +T N+D D
Sbjct: 2319 ENASDINQNRQYQEATNED-AIDNIETGRVEK----METSYTATTEVVTLNEDICDKASG 2373
Query: 280 DVSYPHSVRQATKDDNLD-SAIKS-----FIGNQTETHGLIL 173
P T +DNLD S++ + I +TE H L L
Sbjct: 2374 ADGVPPDGSLKTSEDNLDVSSVVTESEGENINKETEDHKLAL 2415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,527,533
Number of Sequences: 37544
Number of extensions: 153841
Number of successful extensions: 452
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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