Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A23
         (479 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ...    36   0.019
At3g05210.1 68416.m00568 nucleotide repair protein, putative sim...    30   0.93 
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein...    29   1.2  
At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70...    29   2.1  
At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containi...    29   2.1  
At3g09510.1 68416.m01130 hypothetical protein                          27   5.0  
At5g36740.1 68418.m04402 PHD finger family protein                     27   6.5  
At5g36670.1 68418.m04388 PHD finger family protein                     27   6.5  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   6.5  
At2g34730.1 68415.m04265 myosin heavy chain-related low similari...    27   6.5  

>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
           protein
          Length = 748

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 27/114 (23%), Positives = 45/114 (39%), Gaps = 2/114 (1%)
 Frame = -2

Query: 460 DNVSDPHSVQQAMEDNNLDSAITNSIENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQD 281
           D V D  ++    +D   DS +  S +     +D  +DS  +   +      DD D V+D
Sbjct: 442 DAVEDDTAIDSMADDPASDS-VAESDDGDAVENDTAIDSMADDTVSNSMAESDDGDNVED 500

Query: 280 DVSYPHSVRQATKDD--NLDSAIKSFIGNQTETHGLILESSLNYQNATVTGKKH 125
           D +          DD  + DS   +   + T    + LE   N +  +V GK +
Sbjct: 501 DTAIDSMCDDTANDDVGSDDSGSLADTVSDTSVEAVPLEFVANTEGDSVDGKSN 554



 Score = 27.9 bits (59), Expect = 3.7
 Identities = 12/69 (17%), Positives = 31/69 (44%)
 Frame = -2

Query: 478 DLDAVPDNVSDPHSVQQAMEDNNLDSAITNSIENQTETHDPVLDSSLNSQAATLTGNKDD 299
           D++    +  + ++  ++M D+    ++    ++     D  +DS  +  A+      DD
Sbjct: 408 DIERDDSDAVEYYTACESMADDTASDSVAERDDSDAVEDDTAIDSMADDPASDSVAESDD 467

Query: 298 LDLVQDDVS 272
            D V++D +
Sbjct: 468 GDAVENDTA 476


>At3g05210.1 68416.m00568 nucleotide repair protein, putative
           similar to nucleotide repair protein [Lilium
           longiflorum] GI:3297891, SP|P07992 DNA excision repair
           protein ERCC-1 {Homo sapiens}; contains Pfam profile
           PF00633: Helix-hairpin-helix motif
          Length = 410

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 103 YAVLHPDHVFFQLQSRFDNLNYSLVLDH 186
           Y +LHPD+++F+++    N   S+VL H
Sbjct: 170 YHLLHPDYLYFRIRELQKNFKLSVVLCH 197


>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 1080

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -2

Query: 403 SAITN-SIENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQDDV 275
           S IT  ++ + T   + +LD +L   AAT+ G KD ++  +DD+
Sbjct: 743 SGITEENVASATSQLEDLLDRTLGLGAATVAGKKDTIETSKDDM 786


>At4g16660.1 68417.m02517 heat shock protein 70, putative / HSP70,
           putative
          Length = 867

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 26/87 (29%), Positives = 37/87 (42%)
 Frame = -2

Query: 457 NVSDPHSVQQAMEDNNLDSAITNSIENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQDD 278
           N + P SV+   +D +  S IT   E   E    + + SL      L  +     L  DD
Sbjct: 315 NTAAPISVESLHDDRDFRSTITR--EKFEELCKDLWERSLTPLKDVLKHS----GLKIDD 368

Query: 277 VSYPHSVRQATKDDNLDSAIKSFIGNQ 197
           +S    +  AT+   L S I+ FIG Q
Sbjct: 369 ISAVELIGGATRVPKLQSTIQEFIGKQ 395


>At1g68980.1 68414.m07894 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 619

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 132 KNMIWMQYRIMFQVFEALAKLALSCRNYFQHYIV*NEKKKKKTR 1
           + M ++QY    Q + +L    +SC  YF+  ++  E K KK +
Sbjct: 497 RRMTFLQYEPNNQTYLSLINGYVSCEKYFEVVVIWKEFKDKKAK 540


>At3g09510.1 68416.m01130 hypothetical protein
          Length = 484

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 238 RPSWLVLRYEDRKHHPALDPDHLCFQLE*RLENLNYYPALDH 363
           R  + +L ++   + PA++P H    L+ R+ NL   P L H
Sbjct: 132 RSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKH 173


>At5g36740.1 68418.m04402 PHD finger family protein
          Length = 1179

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 382  ENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQDDVSYPHSVRQATKDDNLD 227
            +N  E++  +LD S+  +  T      D++ + D+V   H+ +  TK+  +D
Sbjct: 1030 DNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEID 1081


>At5g36670.1 68418.m04388 PHD finger family protein
          Length = 1193

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = -2

Query: 382  ENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQDDVSYPHSVRQATKDDNLD 227
            +N  E++  +LD S+  +  T      D++ + D+V   H+ +  TK+  +D
Sbjct: 1044 DNDRESNLKLLDGSVEEKEDTKKLTDIDINSLPDEVDDSHADQSDTKEQEID 1095


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
           similar to guanine nucleotide exchange factor [Homo
           sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
           domain
          Length = 1706

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -2

Query: 475 LDAVPDNVSDPHSVQQAMEDNNLDSAITNSIENQTETHDPVLDSSLN 335
           L+++PD+  DP SV   +  ++ DS +   + +    +  V++ SL+
Sbjct: 47  LESLPDDFHDPSSVVSGLAASDADSVLQPFLLSLETAYSKVVEPSLD 93


>At2g34730.1 68415.m04265 myosin heavy chain-related low similarity
           to  SP|P14105 Myosin heavy chain, nonmuscle (Cellular
           myosin heavy chain) {Gallus gallus}
          Length = 825

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -2

Query: 409 LDSAITNSIENQTETHDPVLDSSLNSQAATLTGNKDDLDLVQDDVSY 269
           ++  +  S     E HD  L SSL            D+D ++D  SY
Sbjct: 1   MEEEVVKSENGSLEFHDDTLSSSLQVNGVLKENENPDVDFLEDLDSY 47


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,068,400
Number of Sequences: 28952
Number of extensions: 136501
Number of successful extensions: 447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)