Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A22
(326 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom... 31 0.044
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 27 0.72
SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF comple... 27 0.72
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch... 25 2.2
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 25 2.2
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 24 6.7
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 24 6.7
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 6.7
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 23 8.8
SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate |Schizosacc... 23 8.8
>SPCC663.10 |||methyltransferase, DUF1613 family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 502
Score = 31.1 bits (67), Expect = 0.044
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 119 RVSWKLYPIWYKNKVYFKILNTY 187
R SW+ YP+W + K+Y K+L Y
Sbjct: 308 RKSWETYPLWVQVKLYEKVLVPY 330
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 27.1 bits (57), Expect = 0.72
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 233 DHKAWGANEEDTWRHEWYFRPVVHD 307
DHK W E + H+ + RPV H+
Sbjct: 331 DHKPWKHEEHCSCHHDKFSRPVPHN 355
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 233 DHKAWGANEEDTWRHEWYFRPVVHD 307
DHK W E + H+ + RPV H+
Sbjct: 219 DHKPWKHEEHCSCHHDKFPRPVPHN 243
Score = 26.2 bits (55), Expect = 1.3
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 233 DHKAWGANEEDTWRHEWYFRPVVHD 307
DHK W E + H+ + RPV H+
Sbjct: 248 DHKPWKHEEHCSCHHDKFPRPVPHN 272
>SPBC1198.13c |tfg2|SPBC660.03c|transcription factor TFIIF complex
beta subunit Tfg2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 27.1 bits (57), Expect = 0.72
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 5 DPVLITNKRDELALKLELKTDYAG 76
D + I NKR ALK LK +Y G
Sbjct: 231 DSIAILNKRGPYALKYSLKPEYKG 254
>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 577
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -2
Query: 250 PPRFMVTGVISLHFKFQVLRMICVQNFKVHLILIP 146
P RF+V V ++ + R++ +QN+ +I+ P
Sbjct: 373 PVRFVVLCVYAIIGCLSIARILAIQNYNAPMIIYP 407
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 2.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +2
Query: 107 KTGPRVSWKLYPIWYKNKVYFKILNTYH 190
K P+V+WK + IW K K ++++H
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFH 54
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 23.8 bits (49), Expect = 6.7
Identities = 8/30 (26%), Positives = 15/30 (50%)
Frame = +2
Query: 209 EVKADDAGDHKAWGANEEDTWRHEWYFRPV 298
E +D + A+ E+ +W+H RP+
Sbjct: 150 EYNSDSSSTDPAFELKEDQSWKHSSILRPL 179
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 23.8 bits (49), Expect = 6.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 212 VKADDAGDHKAWGANEEDTWRHEWYFR 292
+KA +GD K++ + ED R +W+ +
Sbjct: 298 IKALKSGDIKSFRLSLEDNSRRKWFIK 324
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 23.8 bits (49), Expect = 6.7
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 321 NNI*LSCTTGRKYHSCLQVSSSLAPHALWSPASSAFTS 208
NN LS T+ VSSS P W P S+ +S
Sbjct: 131 NNSNLSVTSSANRGRTSSVSSSYDPSFPWGPRMSSVSS 168
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 23.4 bits (48), Expect = 8.8
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = -1
Query: 242 LYGHRRHQPSLQVSSIAYDMCSK 174
++ H + P+L+ SS+A + C K
Sbjct: 45 IFEHNNNSPTLRSSSVACNTCLK 67
>SPAC26F1.06 |gpm1||monomeric 2,3-bisphosphoglycerate
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 211
Score = 23.4 bits (48), Expect = 8.8
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +2
Query: 221 DDAGDHKAWGANEEDTWRHEWYFRP 295
DDA K WGA + WR + P
Sbjct: 105 DDA--RKKWGAEQVQIWRRSYDIAP 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,469
Number of Sequences: 5004
Number of extensions: 27022
Number of successful extensions: 60
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 89857768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -