Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A22
         (326 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0664 + 4850445-4850879,4853155-4854186                           29   0.65 
05_06_0202 - 26339467-26339494,26339579-26339624,26339742-263397...    28   1.5  
07_03_0369 - 17356806-17356934,17357145-17357278,17357989-173582...    27   4.6  
02_04_0458 - 23102262-23102377,23102505-23102661,23103094-231041...    27   4.6  
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    27   4.6  
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563...    26   6.1  
08_02_1413 + 26897815-26899299                                         26   8.0  
03_05_0348 - 23346182-23348022,23348118-23348148                       26   8.0  

>06_01_0664 + 4850445-4850879,4853155-4854186
          Length = 488

 Score = 29.5 bits (63), Expect = 0.65
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +2

Query: 146 WYKNKV-YFKILNTYHTQYLKLEVKADDAGDHKAWGANEEDTWRHEWYF 289
           W+  K+  F + + Y    L  +++ DD G   A G  E   W+H W F
Sbjct: 153 WHFEKMGMFSVQSAYKIA-LAEQLRKDDHGASSATGNGERALWKHIWSF 200


>05_06_0202 -
           26339467-26339494,26339579-26339624,26339742-26339785,
           26340729-26340851,26341010-26341124,26341447-26342207,
           26342305-26342711,26342798-26342900,26344642-26345144
          Length = 709

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 230 GDHKAWGANEEDTWRHEWYFRPVVHD 307
           GD + W A E+  W H+ +    +HD
Sbjct: 172 GDRRLWNAKEDQAWVHDRFDEMNLHD 197


>07_03_0369 -
           17356806-17356934,17357145-17357278,17357989-17358247,
           17358322-17358410,17358644-17358794,17358889-17359032,
           17359358-17359477,17359595-17359769,17359842-17360215
          Length = 524

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 239 KAWGANEEDTWRHEWYFR-PVVHDSQILFY 325
           K+ G++ ED   H  Y+R P  HD+++ ++
Sbjct: 100 KSGGSSAEDLGHHAGYYRLPNTHDARLFYF 129


>02_04_0458 -
           23102262-23102377,23102505-23102661,23103094-23104140,
           23104357-23104500,23105389-23105457
          Length = 510

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 113 GPRVSWKLYPIWYKNKVYFKILNTYHTQYLKL 208
           G +V++ L PIW K    FK+L  Y+ + + +
Sbjct: 113 GQKVTYFLRPIWEKPPKPFKVLPHYYNENVSM 144


>01_06_0230 +
           27718840-27720188,27720983-27721174,27721488-27721569,
           27721651-27721839,27721964-27722077,27722470-27722560,
           27722632-27722789,27723401-27723826,27724355-27724727,
           27725075-27725238
          Length = 1045

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +2

Query: 167 FKILNTYHTQYLKLEVKADDAGDHKAWGANEEDTWRHEWYFRPVVHDSQILF 322
           F++      +   L+++ +D     A   N  D    EW F  ++HD++I F
Sbjct: 423 FEVFTDVRNRPRVLQMELEDRIQKLASRLNATDVNTPEWKFSKMIHDAKIKF 474


>02_04_0654 -
           24755339-24755408,24755488-24755624,24756243-24756326,
           24756929-24756944,24758035-24758405
          Length = 225

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +2

Query: 221 DDAGDHKAWGANEEDTWRHEW 283
           D+ GDH      EE  W H W
Sbjct: 144 DNTGDHHIPNRREEQQWSHWW 164


>08_02_1413 + 26897815-26899299
          Length = 494

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 173 ILNTYHTQYLKLEVKADDAGDHKAWGANEED-TWRHEWYFRPV 298
           +L+ Y+  +L  E +  D+G   A    EED  +  EW  +P+
Sbjct: 265 LLHLYYHWFLPPEERTSDSGGGAAGKEEEEDEAFWDEWLAKPI 307


>03_05_0348 - 23346182-23348022,23348118-23348148
          Length = 623

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = +2

Query: 272 RHEWYFRPVVHD 307
           +H+W +RP+VHD
Sbjct: 266 QHDWSYRPLVHD 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,855,176
Number of Sequences: 37544
Number of extensions: 168946
Number of successful extensions: 425
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 435246480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)