Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A22
(326 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_37828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_2808| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.7
SB_29567| Best HMM Match : Polysacc_deac_1 (HMM E-Value=7.7) 27 3.6
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 27 3.6
SB_16676| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_33781| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.8
SB_39772| Best HMM Match : BAR (HMM E-Value=1.7) 26 6.3
SB_34029| Best HMM Match : fn1 (HMM E-Value=2.4) 26 8.3
SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
SB_4755| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.3
>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1525
Score = 28.7 bits (61), Expect = 1.2
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 215 KADDAGDHKAWGANEEDTWRHEWYFR 292
+A D GD W +EDTWR WY R
Sbjct: 630 EALDKGD--CWSTEQEDTWR-TWYIR 652
>SB_37828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 104 TKTGPRVSW-KLYPIWYKNKVYFKILNTYHTQYLKLEVKADDAGDHKAWGANEEDTWRHE 280
T T P + W +L + + + H+ + V+A DAG +K + AN+ + HE
Sbjct: 294 TSTNPEIDWERLNGVLPSERA--TLSREPHSSLVIARVEASDAGRYKCYAANDYGSIFHE 351
Query: 281 W 283
+
Sbjct: 352 F 352
>SB_2808| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 314
Score = 27.5 bits (58), Expect = 2.7
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +2
Query: 254 NEEDTWRHEWYFRPV 298
N +D W+H+WY RPV
Sbjct: 2 NSQDLWQHQWY-RPV 15
>SB_29567| Best HMM Match : Polysacc_deac_1 (HMM E-Value=7.7)
Length = 760
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -2
Query: 151 IPDRI*FPAHSRPGLRLTRTE*RSVASVICLQFKLESK 38
I R+ P H+ TE ++ASV CL F+ E K
Sbjct: 331 IKTRVTIPCHNNHAWAELPTEPPAIASVHCLDFEAEGK 368
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 27.1 bits (57), Expect = 3.6
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = -1
Query: 272 SKCLLR*PPTLYGHRRHQPSLQVSSIAYDMCSKF*STPYSYTR*DIISSS 123
+KC + P ++ HRR Q +++ + F ST R IS+S
Sbjct: 696 AKCRIPSPKNVFAHRRSQSETLSQTVSLSSATSFTSTSAPEKRKSFISTS 745
>SB_16676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 298
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 264 SSSLAPHALWSPASSAFTSSFKYCV*YVFKILKYTLFLYQIGYNFQLTLGPVFV 103
S L H WS + + +T K+ Y +I T + G FQ+T P+ V
Sbjct: 98 SGKLRDHFKWSHSMAFYTGENKFSTMYAKRIQAATGLREENGGKFQITGYPIGV 151
>SB_33781| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 26.6 bits (56), Expect = 4.8
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = -2
Query: 295 WTEIPLMSPSVFFVSPPRFMVTGVISLHFKFQVLRMICVQNFKVHLILI 149
W + P + +S P V GVIS H + V R + ++ VHL+ +
Sbjct: 47 WNKYPCLLRGSAMMSMPFIKVKGVISAHSRPPVKRFLQLET--VHLVAL 93
>SB_39772| Best HMM Match : BAR (HMM E-Value=1.7)
Length = 210
Score = 26.2 bits (55), Expect = 6.3
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +2
Query: 140 PIWYKNKVYFKILNTYHTQYLKLEVKADD 226
P W V FK+L+ H Y L+ K D
Sbjct: 19 PDWSGRDVVFKLLDQLHVYYADLQEKLQD 47
>SB_34029| Best HMM Match : fn1 (HMM E-Value=2.4)
Length = 182
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 23 NKRDELALKLELKTDYAGDRASFGAGQTKTGPRVSWKLYPIWYKNKVYFKILNTYHTQYL 202
NK DE++ + D D+ K+ ++ WK P W V ++NT TQ L
Sbjct: 105 NKLDEISAHHDFCYDMGKDKGDCDRRMVKSIDQIPWKEKP-WGATAVR-NVINT--TQKL 160
Query: 203 KLEVKADDAG 232
L VK G
Sbjct: 161 GLGVKKSKNG 170
>SB_3867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 242
Score = 25.8 bits (54), Expect = 8.3
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -1
Query: 248 PTL-YGHRRHQPSLQVSSIA 192
PTL GH +HQ S QV SIA
Sbjct: 99 PTLNLGHSKHQNSCQVESIA 118
>SB_4755| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 25.8 bits (54), Expect = 8.3
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 23 NKRDELALKLELKTDYAGDRASFGAGQTKTGPRVSWKLYPIWYKNKVYFKILNTYHTQYL 202
NK DE++ + D D+ K+ ++ WK P W V ++NT TQ L
Sbjct: 105 NKLDEISAHHDFCYDMGKDKGDCDRRMVKSIDQIPWKEKP-WGATAVR-NVINT--TQKL 160
Query: 203 KLEVKADDAG 232
L VK G
Sbjct: 161 GLGVKKSKNG 170
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,166,890
Number of Sequences: 59808
Number of extensions: 194299
Number of successful extensions: 485
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 450550116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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