Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A22
         (326 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58470.1 68416.m06517 expressed protein several hypothetical ...    27   3.9  
At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)...    26   5.2  
At1g51500.1 68414.m05796 ABC transporter family protein similar ...    26   5.2  
At5g61020.2 68418.m07656 YT521-B-like family protein contains Pf...    25   9.0  
At5g61020.1 68418.m07655 YT521-B-like family protein contains Pf...    25   9.0  
At2g48050.1 68415.m06014 expressed protein ; expression supporte...    25   9.0  
At1g66190.1 68414.m07513 expressed protein ; expression supporte...    25   9.0  

>At3g58470.1 68416.m06517 expressed protein several hypothetical
           proteins - Saccharomyces cerevisiae
          Length = 248

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -1

Query: 248 PTLYGH-RRHQPSLQVSSIAYDM 183
           PTLY + ++  PSLQV  + YDM
Sbjct: 111 PTLYVYLKKRDPSLQVQLLEYDM 133


>At4g04770.1 68417.m00699 ATP-binding-cassette transporter (ABC1)
           Identical to the protein described in PMID:11156608 and
           note that sequence was not deposited into GenBank by the
           authors.
          Length = 557

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  AGDRASFGAGQTKTGPRVSWKLYP 142
           AGDR+     Q +TG  ++WK YP
Sbjct: 370 AGDRSKISWTQVETGSAITWK-YP 392


>At1g51500.1 68414.m05796 ABC transporter family protein similar to
           GB:AAF61569 from [Bombyx mori]
          Length = 687

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 116 PRVSWKLYPIWYKNKVYFKILNTYHTQYLKLEVKADDAGDHKAWG 250
           P+V W+ YPI + +   + I   Y   +L LE     AG+ K  G
Sbjct: 547 PKVFWR-YPISFMSYGSWAIQGAYKNDFLGLEFDPMFAGEPKMTG 590


>At5g61020.2 68418.m07656 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 493

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 125 SWKLYPIWYKNKVYFKILNTYH 190
           SWK  P WY     +K  N YH
Sbjct: 168 SWKYMPNWYAVNNTYKPRNGYH 189


>At5g61020.1 68418.m07655 YT521-B-like family protein contains Pfam
           profile PF04146: YT521-B-like family
          Length = 495

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 125 SWKLYPIWYKNKVYFKILNTYH 190
           SWK  P WY     +K  N YH
Sbjct: 170 SWKYMPNWYAVNNTYKPRNGYH 191


>At2g48050.1 68415.m06014 expressed protein ; expression supported by
            MPSS
          Length = 1500

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -2

Query: 304  MYDWTEIPLMSPSVFFVSP 248
            MYDW ++  + P ++F+ P
Sbjct: 1480 MYDWLKVCRLIPCIYFLEP 1498


>At1g66190.1 68414.m07513 expressed protein ; expression supported
           by MPSS
          Length = 270

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
 Frame = +2

Query: 119 RVSWKLYPIWYKN--------KVYFKILNTYHTQYLKLEVKADDA 229
           RVS    P+WY N          Y ++L+TY T+ +   +  DD+
Sbjct: 103 RVSSTKSPLWYTNYQFRGDQETYYSRLLDTYETKNISKRLNIDDS 147


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,149,650
Number of Sequences: 28952
Number of extensions: 138718
Number of successful extensions: 340
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 370553816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)