Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A21
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    29   0.30 
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   1.6  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   6.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.4  
SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme Ubc6|Schizosacc...    25   8.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 29.5 bits (63), Expect = 0.30
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = -1

Query: 193 DDEHLERQTAEGSER*QKPVRKAKATLIPPTLDALE----TCSSCVETFFQYVFSPRSLF 26
           +DEHL  Q +   E  ++P+    +T  P   DA      + SS  +   Q  FSPRS  
Sbjct: 447 EDEHLNLQGSFIEESTKQPISSKPSTSSPDMTDAATGGRVSSSSFRDKILQTNFSPRSTI 506

Query: 25  DNAVHLER 2
           D+  ++ +
Sbjct: 507 DSFSNISK 514


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 44  KNILEKGFDTTGTGFKSIESWWYKSRLG 127
           KNI +  F+TTG G K +E   YK   G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 106 PTLDALETCSSCVETFFQYVFSPRSLFDNAVHLER 2
           P+LD  ETCS+ V       FSP ++  N   + R
Sbjct: 27  PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -2

Query: 318 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGK-TIPVLTGV 196
           +L +G +P+ +  K H LH++ Y  F +D    G+ T P  TG+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGI 323


>SPAC10F6.05c |ubc6||ubiquitin conjugating enzyme
           Ubc6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 20  VIEQRPWTKNILEKGFDTTGTGFKSIESWWYKSRLGFP 133
           +++ +P T+NILE  +  TG      E   Y   L FP
Sbjct: 24  LVDAKPATENILEWHYIITGPPDTPYEGGQYHGTLIFP 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,188,615
Number of Sequences: 5004
Number of extensions: 45239
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)