Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A21
         (502 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = -1

Query: 283 ETYTPPTSVSRLHSRHIN*W*NHTGLDGSHDDEHLERQTAEGSER*QKPVRKAKATLIPP 104
           E YTPP S+S L   H     +H+G   +   +H+  ++A  +     P        IPP
Sbjct: 486 EAYTPPISLSDLQPSHS----SHSG--PAQAPQHIHFESASST-----PSTPPAFHFIPP 534

Query: 103 TLDA---LETCSSCVETFFQYVFSP--RSLFDNAVHLE 5
           + +A   +E   +  ET +    +P  R +F+N  HLE
Sbjct: 535 SSEAPYYVEINDADTETVYVSSVTPMYRPVFENMGHLE 572


>AF045639-8|AAC02566.1|  649|Caenorhabditis elegans Hypothetical
           protein B0212.1 protein.
          Length = 649

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 205 DGSHDDEHLERQTAEGS 155
           DGSH+DEH E++   GS
Sbjct: 332 DGSHEDEHFEKKIMPGS 348


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 171  KPPR--VPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSKPFSNMFLVHGLCSITPCI 10
            KPP+  VP+G ++     +R  Y +L    KP P    P S      G+ + TP I
Sbjct: 3405 KPPQLEVPQGVQTYNPPSQRKYYTRLGREWKPPPKAKTPLSIRVPQSGVSTSTPAI 3460


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,161,886
Number of Sequences: 27780
Number of extensions: 257675
Number of successful extensions: 673
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)