Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A21
(502 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g36670.2 68415.m04498 aspartyl protease family protein contai... 30 1.0
At2g05645.1 68415.m00604 hypothetical protein 30 1.0
At4g34220.1 68417.m04862 leucine-rich repeat transmembrane prote... 29 1.3
At3g02740.1 68416.m00266 aspartyl protease family protein contai... 29 1.3
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 29 1.3
At1g48690.1 68414.m05449 auxin-responsive GH3 family protein sim... 28 3.1
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 28 4.1
At1g14520.1 68414.m01721 oxygenase-related similar to myo-inosit... 28 4.1
At5g22850.1 68418.m02671 aspartyl protease family protein contai... 27 5.4
At3g28850.1 68416.m03599 glutaredoxin family protein 27 5.4
At1g65180.1 68414.m07390 DC1 domain-containing protein contains ... 27 5.4
At5g56640.1 68418.m07071 expressed protein similar to myo-inosit... 27 9.4
At5g39930.1 68418.m04842 expressed protein ; expression supporte... 27 9.4
At4g26260.1 68417.m03779 expressed protein similar to myo-inosit... 27 9.4
At3g53530.1 68416.m05911 heavy-metal-associated domain-containin... 27 9.4
At2g48050.1 68415.m06014 expressed protein ; expression supporte... 27 9.4
At1g72800.1 68414.m08416 nuM1-related contains similarity with n... 27 9.4
>At2g36670.2 68415.m04498 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 507
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 267 RQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPP 163
RQ+ + +VD + G + P L G+ T + G PP
Sbjct: 76 RQSSVGGVVDFPVQGSSDPYLVGLYFTKVKLGSPP 110
>At2g05645.1 68415.m00604 hypothetical protein
Length = 204
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 108 HQLSMLLKPVPVVSKPFSNMFLVHG 34
H+ +LL P P++S P S+MF+ HG
Sbjct: 130 HRPFVLLMPRPLLSSPHSHMFVEHG 154
>At4g34220.1 68417.m04862 leucine-rich repeat transmembrane protein
kinase, putative protein kinase TMKL1, Arabidopsis
thaliana, PID:E353150
Length = 757
Score = 29.5 bits (63), Expect = 1.3
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = -2
Query: 243 VDISIDGKTIPVLTGVTMTNIWRGKPPRVPRGNRSLCGKPRRLLYHQLSMLLKPVPVVSK 64
VD+S + T P+ + +++ N + GN+ LCGKP ++L S L P P +S+
Sbjct: 249 VDLSFNNLTGPIPSSLSLLN----QKAESFSGNQELCGKPLKILCSIPSTLSNP-PNISE 303
Query: 63 PFS 55
S
Sbjct: 304 TTS 306
>At3g02740.1 68416.m00266 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 488
Score = 29.5 bits (63), Expect = 1.3
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 294 GIVSKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 160
G + H +HR + L +DI + G + P G+ I G P R
Sbjct: 52 GALRAHDVHRHSRLLSAIDIPLGGDSQPESIGLYFAKIGLGTPSR 96
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 29.5 bits (63), Expect = 1.3
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = -2
Query: 285 SKHTLHRQAYLAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 160
++H Q+ + +V+ +DG + P L G+ T + G PPR
Sbjct: 54 ARHGRLLQSPVGGVVNFPVDGASDPFLVGLYYTKVKLGTPPR 95
>At1g48690.1 68414.m05449 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 190
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 87 KPVPVVSKPFSNMFLVHGLCSIT 19
K PV +K F NM +H LCS T
Sbjct: 99 KIFPVNNKYFENMIFIHALCSST 121
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +1
Query: 211 RYGFTIN*YVYYEGEIRLSVECMF 282
R G IN +VYYE +IR V+ +F
Sbjct: 227 RVGTCINGHVYYEAQIRFKVDDIF 250
>At1g14520.1 68414.m01721 oxygenase-related similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 311
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 266 RWSVCFDTMPLGFPFDREIYMPTFFTNN 349
+W+V DT P+G FD I +F N
Sbjct: 163 QWAVVGDTFPVGCAFDESIVHHKYFKEN 190
>At5g22850.1 68418.m02671 aspartyl protease family protein contains
Pfam profile: PF00026 eukaryotic aspartyl protease
Length = 493
Score = 27.5 bits (58), Expect = 5.4
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 255 LAFIVDISIDGKTIPVLTGVTMTNIWRGKPPR 160
L ++D +DG P + G+ T + G PPR
Sbjct: 61 LGGVIDFPVDGTFDPFVVGLYYTKLRLGTPPR 92
>At3g28850.1 68416.m03599 glutaredoxin family protein
Length = 428
Score = 27.5 bits (58), Expect = 5.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 292 HCVETYTPPTSVSRLHSRH 236
HC Y+PP V R HS H
Sbjct: 14 HCRRGYSPPVDVQRSHSVH 32
>At1g65180.1 68414.m07390 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 653
Score = 27.5 bits (58), Expect = 5.4
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Frame = -2
Query: 174 GKPPRVPRGNRSLCGKP--RRLLYH 106
GKPP GN SLCGK + YH
Sbjct: 186 GKPPAYTDGNCSLCGKKIFDEMFYH 210
>At5g56640.1 68418.m07071 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 314
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 266 RWSVCFDTMPLGFPFDREIYMPTFFTNNMKFTD 364
+W+V DT P+G FD +F N F +
Sbjct: 166 QWAVVGDTFPVGCAFDESNVHHKYFMENPDFNN 198
>At5g39930.1 68418.m04842 expressed protein ; expression supported
by MPSS
Length = 423
Score = 26.6 bits (56), Expect = 9.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +2
Query: 332 TFFTNNMKFTDVQVYR 379
T +T +KF+DVQVYR
Sbjct: 315 TVYTKTVKFSDVQVYR 330
>At4g26260.1 68417.m03779 expressed protein similar to myo-inositol
oxygenase [Sus scrofa] gi|17432544|gb|AAL39076
Length = 317
Score = 26.6 bits (56), Expect = 9.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 266 RWSVCFDTMPLGFPFDREIYMPTFFTNNMKF 358
+W+V DT P+G FD +F N F
Sbjct: 169 QWAVVGDTFPVGCAFDESNVHHKYFVENPDF 199
>At3g53530.1 68416.m05911 heavy-metal-associated domain-containing
protein low similarity to gi:3168840 copper homeostasis
factor; contains Pfam heavy-metal-associated domain
PF00403
Length = 247
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Frame = -2
Query: 297 RGIVSKHTLHRQAYLAFIVD-----ISIDGKTIPV-----LTGVTMTNIWRGKPPRVPRG 148
+G V KH Q +F +D +++ G P+ L+ V W PP +PR
Sbjct: 184 QGKVKKHLSKMQGVTSFNIDFASKKVTVTGDITPLEVLGCLSKVKNAQFWTPPPPSIPRA 243
Query: 147 N 145
N
Sbjct: 244 N 244
>At2g48050.1 68415.m06014 expressed protein ; expression supported by
MPSS
Length = 1500
Score = 26.6 bits (56), Expect = 9.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 52 IGKRFRHNWNRFQEHRELV 108
IG+ FRH W+R Q + ++V
Sbjct: 980 IGRIFRHIWSRMQSNNDIV 998
>At1g72800.1 68414.m08416 nuM1-related contains similarity with nuM1
GI:1279563 from [Medicago sativa]
Length = 335
Score = 26.6 bits (56), Expect = 9.4
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Frame = -1
Query: 193 DDEHLERQTAEGSER*QKPVRKAKATLIPP-TLDALETCS---SCVETFFQYVFSPRSLF 26
DD +++ + + S ++PV K A+ P T D+L + + ++ F F P SLF
Sbjct: 109 DDSYMDTSSEDESSSAEEPVNKPAASAAKPATKDSLFSAGFKPAAKDSLFSAGFKPDSLF 168
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,467,712
Number of Sequences: 28952
Number of extensions: 241050
Number of successful extensions: 571
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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