Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A20
         (553 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical pr...    36   0.015
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    32   0.24 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    32   0.24 
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical p...    28   5.1  
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    27   9.0  

>U40415-5|AAK39251.1|  655|Caenorhabditis elegans Hypothetical
           protein K02G10.5 protein.
          Length = 655

 Score = 36.3 bits (80), Expect = 0.015
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 397 IEKCAENCISTPEYNPVCGSDXK-TYKNQGRLFCAQNCGVKVTLARQAPCPSS 552
           +E C+ENC     +NPVC  D K T+ +     CA   G+K   +    C  S
Sbjct: 442 LETCSENCHCDSFFNPVCSEDSKLTFLSPCHAGCADMPGIKFGASNWTNCGCS 494


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 427 TPEYNPVCGSDXKTYKNQGRL 489
           T E+  VCGSD KTY N+ RL
Sbjct: 469 TDEFKEVCGSDGKTYSNECRL 489



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 403 KCAENCISTPEYNPVCGSDXKTYKNQ 480
           KC+E C     +  VCG+D KTY N+
Sbjct: 318 KCSEQCTMNSAH--VCGTDGKTYLNE 341


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +1

Query: 427 TPEYNPVCGSDXKTYKNQGRL 489
           T E+  VCGSD KTY N+ RL
Sbjct: 477 TDEFKEVCGSDGKTYSNECRL 497



 Score = 29.1 bits (62), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 403 KCAENCISTPEYNPVCGSDXKTYKNQ 480
           KC+E C     +  VCG+D KTY N+
Sbjct: 326 KCSEQCTMNSAH--VCGTDGKTYLNE 349


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 388 RQTIEKCAENCISTPEYNPVCGSDXKTYKN 477
           R + + C  NC +T E++PVC ++   Y+N
Sbjct: 109 RCSSKDCNHNCTNT-EFDPVCDTNGSVYRN 137



 Score = 27.1 bits (57), Expect = 9.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 400 EKCAENCISTPEYNPVCGSDXKTYKNQGRLFCAQNC 507
           E C   C  T + +P+C SD  TY+N  + F  Q C
Sbjct: 584 EACQMPC--TDDKHPICASDFSTYENLCQ-FRKQKC 616


>Z81479-1|CAB03944.1| 1043|Caenorhabditis elegans Hypothetical
           protein C34F6.1 protein.
          Length = 1043

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +1

Query: 391 QTIEKCAENCISTPEYNPVCGSDXKTYKNQGRLFCAQN 504
           Q ++ C    + T E NP   S+   YKN  R+ C  N
Sbjct: 284 QCVDACETETV-TDEANPCKFSNAAKYKNGSRIICGPN 320


>Z81112-6|CAB03277.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 412 ENCISTPEYNPVCGSDX-KTYKN 477
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


>Z77136-10|CAB00887.1|  673|Caenorhabditis elegans Hypothetical
           protein ZC376.3 protein.
          Length = 673

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +1

Query: 412 ENCISTPEYNPVCGSDX-KTYKN 477
           +  + T EY P C SD  KTYKN
Sbjct: 73  DGILETKEYKPACMSDAKKTYKN 95


>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = -1

Query: 550  KTGTGLAWPKSL*LHNFGHKIVFPGFCKFYXRYHTRGCILVLKCNS 413
            KTG  L   K + ++NF  K +  G C    RY       + KCN+
Sbjct: 952  KTGVKLQTIKDIEMYNFIEKGIRGGICNAMLRYSRANNRHLKKCNT 997


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,861,031
Number of Sequences: 27780
Number of extensions: 304209
Number of successful extensions: 760
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)