Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A19
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.11 |spc3||signal peptidase subunit Spc3 |Schizosaccharo...    25   1.0  
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF...    22   9.6  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    22   9.6  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    22   9.6  
SPAC1D4.03c |aut12||autophagy associated protein Aut12|Schizosac...    22   9.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    22   9.6  

>SPAC56F8.11 |spc3||signal peptidase subunit Spc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 185

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = -1

Query: 135 YRDTQFPDSFLGVVQVCARIKF---TDINRIYETVEKIIILLLFIKYN 1
           YR  +F  +F  V Q  A++KF    D++ +++   K +++ L   Y+
Sbjct: 52  YRSARFYHAFRNVRQQYAQVKFNMDADLSELWDWNTKHVVVYLVASYS 99


>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
           eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 918

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 105 LGVVQVCARIKFTDINRIYETVEKII 28
           +GVV+  AR+    ++R+Y   E++I
Sbjct: 500 IGVVENTARLIMRRLDRVYYKPEQVI 525


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 81  RIKFTDINRIYETVEKIIILLLFIK 7
           +IKF D+  + E  E+I+  + F+K
Sbjct: 292 KIKFADVAGVDEAKEEIMEFVKFLK 316


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
            Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 126  TQFPDSFLGVVQVCARIKFTDINRI 52
            TQ+P+S   V++ C  + F D NR+
Sbjct: 1043 TQYPESIFSVIKFCV-VDF-DNNRV 1065


>SPAC1D4.03c |aut12||autophagy associated protein
           Aut12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 95  TTPRNESGNCVSLY 136
           TTPRN    C+S Y
Sbjct: 394 TTPRNPGSPCISHY 407


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 34  FFYSFIYSINISKFDSC 84
           F +SF+Y   I  FD+C
Sbjct: 557 FEFSFVYDNEIVLFDTC 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,623
Number of Sequences: 5004
Number of extensions: 6699
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)