Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A19
         (138 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0445 - 14099737-14100177,14100301-14100669                       26   4.8  
04_03_0240 - 13228046-13228170,13228247-13228307,13229301-132293...    26   4.8  
01_01_1101 + 8731427-8732938                                           25   6.4  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    25   8.5  

>05_03_0445 - 14099737-14100177,14100301-14100669
          Length = 269

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 123 QFPDSFLGVVQVCARIKFTDINRIYETV 40
           QFP  +LG+  +  R++ TD+  I++ +
Sbjct: 29  QFPIKYLGLPLLLGRLRKTDVQPIFDKI 56


>04_03_0240 -
           13228046-13228170,13228247-13228307,13229301-13229368,
           13229979-13230051,13230130-13230231,13231473-13231592,
           13231795-13231913,13231990-13232047,13232152-13232208,
           13232719-13232851,13233534-13233591,13234592-13234601,
           13239996-13240961
          Length = 649

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -1

Query: 123 QFPDSFLGVVQVCARIKFTDINRIYETV 40
           QFP  +LG+  +  R++ TD+  I++ +
Sbjct: 29  QFPIKYLGLPLLLGRLRKTDVQPIFDKI 56


>01_01_1101 + 8731427-8732938
          Length = 503

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 111 SFLGVVQVCARIKFTDINRIY 49
           +FL V+ VC+ +  TD+ R Y
Sbjct: 311 TFLAVLSVCSHVGLTDLGRWY 331


>04_04_1197 + 31672019-31672325,31672431-31672740,31673334-31678335,
            31678677-31678715
          Length = 1885

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 59   LISVNLIRAQTCTTPRNESGNCV 127
            L+++ L+RA  C +   E+G C+
Sbjct: 1626 LVNLRLLRAHRCLSGYGENGRCI 1648


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,767
Number of Sequences: 37544
Number of extensions: 30883
Number of successful extensions: 76
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)