Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A18
         (422 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   1.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.8  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   3.7  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   8.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   8.6  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   8.6  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   8.6  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 22.6 bits (46), Expect = 1.6
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 367 PARKMARCSR*VLDVDCNCCN 305
           P R    C   + D +CNC N
Sbjct: 114 PCRNNGSCVDRIADFECNCKN 134


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +1

Query: 265 WSRSKAGRKNSKFYYSS 315
           W ++ + +K +++YY S
Sbjct: 229 WKKNDSSKKKTRYYYRS 245


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 269 DHSSFHGYRLEKRVGCKRHVLGNKRQALAYVSRQVRVGVVDE 144
           D +S   Y +    GCK       R+ L+Y  R+ +  ++D+
Sbjct: 91  DRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDK 132


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 145 SSTTPTRTCLE 177
           +S+TPT +C+E
Sbjct: 148 ASSTPTNSCME 158


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -1

Query: 140 HEFPRGFPGQQHDQLLERGGAGLV 69
           HEF  G      D++ +  GAG +
Sbjct: 612 HEFKNGDSSSLLDKMRDSSGAGRI 635


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 145 SSTTPTRTCLE 177
           +S+TPT +C+E
Sbjct: 148 ASSTPTNSCME 158


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +1

Query: 145 SSTTPTRTCLE 177
           +S+TPT +C+E
Sbjct: 148 ASSTPTNSCME 158


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,904
Number of Sequences: 336
Number of extensions: 2306
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9384961
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)