Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A18
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 1.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 2.1
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch... 25 3.7
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy... 25 4.8
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni... 25 4.8
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 4.8
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 6.4
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 25 6.4
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 6.4
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 24 8.5
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 24 8.5
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 24 8.5
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 26.6 bits (56), Expect = 1.6
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 117 RETARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTV 248
++T KFV + N+ HTDL + +T +SF L++ +
Sbjct: 916 KKTGHKFVRINNHEHTDLQEYIGTYVTDDNGSLSFREGVLVEAL 959
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 26.2 bits (55), Expect = 2.1
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 133 NSCISSTTPTRTCLETYAKA*RLLPSTCLL 222
NSC S+T+ TR C + Y+ R+ + C L
Sbjct: 1241 NSCNSTTSNTRICEKCYSLVPRMSCTFCCL 1270
>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 3.7
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 188 LAYVSRQVRVGVVDEMHEFPRGFPGQQHDQLLERGGAGLVLG--FRL 54
L Y+ ++R + EF RG+ GQQ + LL L G FRL
Sbjct: 50 LGYLFERLRSFTSLKETEFQRGYAGQQSEGLLTHHSKSLKSGRPFRL 96
>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 581
Score = 25.0 bits (52), Expect = 4.8
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Frame = +3
Query: 126 ARKFVHLVNYTHTDL-PRNVRQGLTLVTK--HMSFAADSLLKTVPVETAMVEIKG 281
A F+HL+ + H D+ P NV L+T+ ++ L ++PV ++MV+++G
Sbjct: 404 ALNFIHLLEFVHLDVKPSNV-----LITRDGNLKLGDFGLATSLPV-SSMVDLEG 452
>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 81 GGLGSRVQVGLETSIAPWLLSKLAL 7
GGL R ++T A W+LS L L
Sbjct: 249 GGLNGRTNKDVDTCYAYWVLSSLKL 273
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -3
Query: 411 VHTLTAVLSSHVLRFPRGKWRGVQDRSWMWIVTAVIE 301
+H + S L F +GKWR +D +W++ +E
Sbjct: 489 LHAVQGYYSFPYLTFSKGKWR--KDGDSLWVLAYNVE 523
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 24.6 bits (51), Expect = 6.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = -2
Query: 298 WSFSFQPLISTIAVSTGTVLRRE 230
+ FSF L S ++V +GTVL ++
Sbjct: 275 YGFSFNYLDSVVSVRSGTVLNKQ 297
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 24.6 bits (51), Expect = 6.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 271 RSKAGRKNSKFYYSSYNPHPRPIL 342
R K N+K + S NP PRPIL
Sbjct: 227 RLKDHLMNTKDAFVSVNPKPRPIL 250
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 24.6 bits (51), Expect = 6.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 34 SYTRL*ANLNPRTKPAPPRSRSWSCC 111
+YT + N P+T+ P RS W CC
Sbjct: 293 TYTPMQRN-PPKTELEPIRSMRWCCC 317
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2685
Score = 24.2 bits (50), Expect = 8.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3
Query: 396 AVLSSHVLRFPRGKWRGVQDRSWM-WIVTAVIEFGV-FPS 283
AV S++LR KW +SWM W+ ++ E + FPS
Sbjct: 127 AVYMSNLLRNVEQKWIQFLHKSWMKWLHISIQESQLTFPS 166
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 8.5
Identities = 9/34 (26%), Positives = 21/34 (61%)
Frame = +3
Query: 168 LPRNVRQGLTLVTKHMSFAADSLLKTVPVETAMV 269
L +++R GL+ + +SF ++ +T P ++ +V
Sbjct: 595 LTKDIRTGLSQIFNRLSFFLENTNQTAPDDSVLV 628
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 8.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -2
Query: 70 FSGSGWLRDEYSSLAFVQAS 11
FSG WLRD SL+ V S
Sbjct: 42 FSGQAWLRDTIPSLSNVVES 61
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,113
Number of Sequences: 5004
Number of extensions: 38708
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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