Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A18
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767 29 1.2
09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757 29 1.2
11_05_0091 - 18982390-18982948,18983088-18983173 29 1.5
02_02_0099 + 6768115-6768285,6769950-6770034,6770501-6770628,677... 29 2.0
10_08_0838 - 20927020-20927207,20927288-20927491,20927654-209282... 28 3.6
10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010 28 3.6
09_06_0280 + 22010270-22011407,22011890-22013097 28 3.6
12_02_0246 - 16393943-16394410 27 4.7
11_06_0013 - 19252779-19252805,19252947-19253090,19253572-192536... 27 4.7
04_01_0344 + 4517730-4517918,4518212-4518359,4518454-4518569,451... 27 4.7
09_04_0032 - 13953323-13955269 27 6.2
03_05_0615 + 26137785-26138593,26139307-26141368 27 6.2
12_01_0125 - 946480-947242,947283-947374,947462-947680,948059-94... 27 8.2
10_02_0197 + 6596197-6596402,6596766-6596828,6599679-6599795,660... 27 8.2
07_03_0922 - 22612773-22613321,22613616-22614189,22614389-226144... 27 8.2
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 27 8.2
05_04_0223 - 19192411-19192951,19193363-19193388 27 8.2
04_04_0181 - 23363893-23364458,23364548-23364626,23364749-233648... 27 8.2
02_05_1272 + 35373843-35374031,35374343-35374490,35374586-353747... 27 8.2
01_05_0170 - 18888849-18889880 27 8.2
>11_01_0613 + 4904869-4905126,4905389-4906138,4907708-4907767
Length = 355
Score = 29.5 bits (63), Expect = 1.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 58 LNPRTKPAPPRSRSW 102
LNPR PAPP +R+W
Sbjct: 77 LNPRATPAPPSARTW 91
>09_04_0152 - 15168285-15168733,15168813-15170712,15171653-15171757
Length = 817
Score = 29.5 bits (63), Expect = 1.2
Identities = 25/109 (22%), Positives = 40/109 (36%)
Frame = +3
Query: 78 RPAXXXXXXXXXXRETARKFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTVPVE 257
RPA R+ AR+FV++ ++ VR +V LL+ E
Sbjct: 210 RPARLWEDMYVAIRD-ARRFVYVAGWSVNADITLVRDASRMVPGAEGVTLGELLRRKADE 268
Query: 258 TAMVEIKGWKEKXXXXXXXXXSTSKTYLEHLAIFLAGNEEREKIAPRSA 404
V + W++K +T+ E F G R + PR+A
Sbjct: 269 GVAVLVMPWQDKTSVSFLGNGGLMRTHDEETRRFFEGTNVRCFLCPRNA 317
>11_05_0091 - 18982390-18982948,18983088-18983173
Length = 214
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 55 NLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTP 159
+L P P+P + CC G+ NS ++S TP
Sbjct: 130 SLQPSPSPSPTPDSATPCCLTGRLADNSTLNSDTP 164
>02_02_0099 +
6768115-6768285,6769950-6770034,6770501-6770628,
6771429-6771465,6773108-6774193,6774337-6774447,
6774701-6774817,6774818-6775120,6776092-6776513,
6776645-6777274
Length = 1029
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 230 VGCKRHVLGNKRQALAYVSRQVRVGVVDEMHEFPRGFPGQQH 105
VG HVLG Q A +R+ V+DE E RGF Q H
Sbjct: 782 VGTPCHVLG-MLQGRALCPDHIRMFVLDEADEVLRGFKDQIH 822
>10_08_0838 - 20927020-20927207,20927288-20927491,20927654-20928297,
20928549-20928788,20928884-20928978,20929087-20929434,
20929824-20930042,20930422-20930487,20931191-20931362,
20931456-20931703,20931933-20932073,20932238-20932330,
20932421-20932471,20933571-20933693,20933793-20934035,
20934131-20934211,20935245-20935340,20935535-20936320,
20936443-20937012,20937322-20937427,20938102-20938206,
20938311-20938432,20939321-20939413,20940081-20940104
Length = 1685
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 203 YQAHVFCSRLSSQDGTRGNCYGRDQRLEGKTPNSITAVTIHIQ 331
Y + S +S Q G GNC + G T +S+ + H+Q
Sbjct: 1402 YLLLLVASEVSLQSGDHGNCIAQATEALGVTSSSVDSFFAHLQ 1444
>10_01_0126 + 1511963-1512052,1513440-1513785,1513884-1515010
Length = 520
Score = 27.9 bits (59), Expect = 3.6
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 269 DHSSFHGYRLEKRVGCKRHVLGNKRQALAYVSRQ-VRVGVVDEMHEFP 129
DH S HG++ K GC+ ++G + + + V+ + + + E HE P
Sbjct: 67 DHHSKHGHKKRKHSGCE--IVGEETRKVCNVTMEHLEKSSLSEEHEAP 112
>09_06_0280 + 22010270-22011407,22011890-22013097
Length = 781
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 91 SRSWSCC*PGKPRGNSCISSTTPTRTCLETY 183
+ +WSC PG+ R ++CIS+ + + Y
Sbjct: 279 ANNWSCPTPGEARRSACISNNSYCHNVTDNY 309
>12_02_0246 - 16393943-16394410
Length = 155
Score = 27.5 bits (58), Expect = 4.7
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 239 QDGTRGNCYGRDQRLEGKTPNSITAVTIHIQD 334
QDG N + RL+G TP S+ A + + D
Sbjct: 23 QDGLAPNGVHQGHRLDGSTPESLHAAGVRVGD 54
>11_06_0013 -
19252779-19252805,19252947-19253090,19253572-19253663,
19253757-19253835,19253965-19254031,19254163-19254254,
19254986-19255102,19255254-19255365,19255479-19255594,
19255680-19255756,19255912-19255993,19256077-19256214,
19258806-19259009
Length = 448
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +1
Query: 61 NPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 174
+PR P PP + SW C P P G +SS TCL
Sbjct: 288 SPRNGPLPPNAPSW-CEAPFDPEG--LLSSLMAIVTCL 322
>04_01_0344 +
4517730-4517918,4518212-4518359,4518454-4518569,
4518917-4518979,4519084-4519152,4519317-4519352
Length = 206
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/53 (32%), Positives = 23/53 (43%)
Frame = +1
Query: 16 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCL 174
+G K Y+ + + TKP +R WS C RGN S+ TR L
Sbjct: 105 MGDKDMDYSSI--EYHKPTKPRVRHTRPWSSCIKSSNRGNFHPSTKLRTRVNL 155
>09_04_0032 - 13953323-13955269
Length = 648
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = -3
Query: 147 RDARISSRFPWSATRPTPRAWRG 79
RDA + R PW+++ +P WRG
Sbjct: 40 RDA-VGPRLPWASSSSSPCGWRG 61
>03_05_0615 + 26137785-26138593,26139307-26141368
Length = 956
Score = 27.1 bits (57), Expect = 6.2
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 132 KFVHLVNYTHTDLPRNVRQGLTLVTKHMSFAADSLLKTVPVETAMVEIKGWKEK 293
K L + D+ R +R+ +T +T +S LLK +E ++K W+ K
Sbjct: 14 KLATLAEQKYGDV-RRIRREITFLTDELSSMNALLLKLADMEELDSQLKEWRNK 66
>12_01_0125 -
946480-947242,947283-947374,947462-947680,948059-949156
Length = 723
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +2
Query: 35 AILVSKPT*TREPSPPRHARGVGRVADQGNREEIR-ASRQLHPHGLA*KR 181
AI+V P+ R+PSP RG G A G R + +SR+L G + K+
Sbjct: 264 AIIV--PSRYRQPSPVGGRRGAGSPAPGGRRASLSPSSRRLSGEGSSKKK 311
>10_02_0197 +
6596197-6596402,6596766-6596828,6599679-6599795,
6600311-6600545,6600771-6600929,6601159-6601310,
6602511-6602571
Length = 330
Score = 26.6 bits (56), Expect = 8.2
Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -3
Query: 375 LRFPRGKWRGVQDRSWMWI-VTAVIEFGVFPSSL 277
L F RGKWR + R++ WI A I + V P SL
Sbjct: 65 LIFERGKWRDMDWRAFGWIFFNAFIGYAV-PMSL 97
>07_03_0922 -
22612773-22613321,22613616-22614189,22614389-22614466,
22615455-22615504,22616215-22616448
Length = 494
Score = 26.6 bits (56), Expect = 8.2
Identities = 19/55 (34%), Positives = 25/55 (45%)
Frame = +2
Query: 26 SQGAILVSKPT*TREPSPPRHARGVGRVADQGNREEIRASRQLHPHGLA*KRTPR 190
S+G V+ T + +PP RGVGR G + RA+ Q KRT R
Sbjct: 443 SRGGSSVTANVKTMQRNPPAKKRGVGRPPKNGQK---RAAAQQDSPNKGRKRTRR 494
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 283 GRKNSKFYYSSYNPHPRPILNTSPFSS 363
GR S SSY P PR N SP SS
Sbjct: 114 GRSASPSPCSSYQPSPRASYNPSPASS 140
>05_04_0223 - 19192411-19192951,19193363-19193388
Length = 188
Score = 26.6 bits (56), Expect = 8.2
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = -3
Query: 117 WSATRPTPRAWRGGLGS-RVQVGLETSIAPW 28
W RP PRA RGG R QV APW
Sbjct: 153 WQGRRPAPRARRGGTPRWRRQVASRDG-APW 182
>04_04_0181 -
23363893-23364458,23364548-23364626,23364749-23364818,
23367534-23367538
Length = 239
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 310 SSYNPHPRPILNTSPFSSRETKNVRR*H 393
+SY+ HP P +SP + T +V R H
Sbjct: 171 ASYSAHPSPCYRSSPLAGGYTLDVARSH 198
>02_05_1272 +
35373843-35374031,35374343-35374490,35374586-35374704,
35374992-35375121,35375122-35375201
Length = 221
Score = 26.6 bits (56), Expect = 8.2
Identities = 17/49 (34%), Positives = 20/49 (40%)
Frame = +1
Query: 16 LGQKPRSYTRL*ANLNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPT 162
+G K Y + P TKP +R WS C RGN SS T
Sbjct: 105 MGDKDMDYLAIIEYHKP-TKPRVRHTRPWSSCTKSSNRGNFHPSSILQT 152
>01_05_0170 - 18888849-18889880
Length = 343
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -2
Query: 73 WFSGSGWLRDEYS-SLAFVQAST 8
W S WL DEYS +L F ST
Sbjct: 49 WIMASRWLEDEYSENLVFYSLST 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,658
Number of Sequences: 37544
Number of extensions: 291979
Number of successful extensions: 1001
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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