Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A18
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical ...    27   4.2  
U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical pr...    27   5.5  
AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion transpo...    27   5.5  
Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z50859-2|CAA90727.2|  524|Caenorhabditis elegans Hypothetical pr...    26   9.7  
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    26   9.7  

>Z75542-6|CAA99864.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +1

Query: 58  LNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCLETYAKA*RLLPSTCLLQPTLF 237
           L   T PAP  + + +   P      + I++TT  RT   T        P+T     T+ 
Sbjct: 300 LPAETVPAPKTTTTTTTTVPS----TTTITTTTTQRTTPYTTTTTTTAAPTTT----TMK 351

Query: 238 SRRYPWKLLWSRSKAGRKNSKFYYSSYNPHPRPI-LNTSPFS 360
           + +YP + +    K  +KN + YY ++ P+ RP  LN +  S
Sbjct: 352 TIKYPIQEV----KKEKKNYESYYKNWKPYRRPFDLNPTQIS 389


>Z75538-3|CAA99842.3|  552|Caenorhabditis elegans Hypothetical
           protein F55D12.5 protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +1

Query: 58  LNPRTKPAPPRSRSWSCC*PGKPRGNSCISSTTPTRTCLETYAKA*RLLPSTCLLQPTLF 237
           L   T PAP  + + +   P      + I++TT  RT   T        P+T     T+ 
Sbjct: 300 LPAETVPAPKTTTTTTTTVPS----TTTITTTTTQRTTPYTTTTTTTAAPTTT----TMK 351

Query: 238 SRRYPWKLLWSRSKAGRKNSKFYYSSYNPHPRPI-LNTSPFS 360
           + +YP + +    K  +KN + YY ++ P+ RP  LN +  S
Sbjct: 352 TIKYPIQEV----KKEKKNYESYYKNWKPYRRPFDLNPTQIS 389


>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 319 CNCCNRIWS 293
           CNCCNR WS
Sbjct: 159 CNCCNRTWS 167


>AL031624-2|CAA20942.1|  244|Caenorhabditis elegans Hypothetical
           protein H16D19.3 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = -2

Query: 319 CNCCNRIWS 293
           CNCCNR WS
Sbjct: 147 CNCCNRTWS 155


>U41021-5|AAA82335.2|  652|Caenorhabditis elegans Hypothetical
           protein F14D12.5 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 360 GKWRGVQDRSWMWIVTAVI 304
           G WR  +   W+WI+TAV+
Sbjct: 436 GLWRCSKHDFWIWIITAVV 454


>AY887908-1|AAX34420.1|  652|Caenorhabditis elegans anion
           transporter SULP-2 protein.
          Length = 652

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 360 GKWRGVQDRSWMWIVTAVI 304
           G WR  +   W+WI+TAV+
Sbjct: 436 GLWRCSKHDFWIWIITAVV 454


>Z70310-1|CAA94366.1|  552|Caenorhabditis elegans Hypothetical
           protein R11A8.1 protein.
          Length = 552

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 304 YYSSYNPHPRPILNTSPFSSRETKNV 381
           Y++SY P   P LN  PF      NV
Sbjct: 511 YFNSYTPFVNPFLNPFPFPFPNNLNV 536


>Z50859-2|CAA90727.2|  524|Caenorhabditis elegans Hypothetical
           protein T26C5.2 protein.
          Length = 524

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -1

Query: 188 LAYVSRQVRVGVVDEMHEFPRGFPGQQ 108
           +A+    VR+  V+E ++ P+G+ G Q
Sbjct: 403 VAFRDYSVRIEAVEEFNDLPKGYDGMQ 429


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 20   DKSQGAILVSKPT*TREPSPPRHARGVGRVADQGNREEIR-ASRQLH 157
            D+  G   + +    +EP PPR   G+  + D    E +R A++ LH
Sbjct: 1227 DRETGRKFMRRVVPFKEPQPPRQLEGIDPLFDYITIEVMRAAAKNLH 1273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,485,030
Number of Sequences: 27780
Number of extensions: 225775
Number of successful extensions: 647
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)