Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A18
         (422 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1) domain...    30   0.74 
At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid t...    28   3.0  
At5g13650.2 68418.m01585 elongation factor family protein contai...    27   5.2  
At5g13650.1 68418.m01584 elongation factor family protein contai...    27   5.2  
At2g20300.1 68415.m02371 protein kinase family protein contains ...    27   5.2  
At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains ...    27   5.2  
At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containi...    27   6.9  
At1g51150.1 68414.m05750 DegP protease family contains similarit...    27   6.9  
At4g08940.1 68417.m01471 expressed protein                             26   9.1  
At2g31550.1 68415.m03854 GDSL-motif lipase/hydrolase family prot...    26   9.1  
At2g31540.1 68415.m03853 GDSL-motif lipase/hydrolase family prot...    26   9.1  

>At3g24715.1 68416.m03103 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein  contains Pfam profile
           PF00564: PB1 domain
          Length = 756

 Score = 29.9 bits (64), Expect = 0.74
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 235 FSRRYPWKLLWSRSKAGRKNSKFYYSSYN--PHPRPILNTSPFSSRETKNVRR*HRGQRM 408
           F +R P ++L   + A R N  F    YN   +P P ++ SPF  R++        G   
Sbjct: 331 FCKRTPGQMLRLDATAMRPNPLFNGVQYNMASYPSPPVSPSPFQQRDSNGAYSQFHGNNS 390

Query: 409 NNET 420
           ++E+
Sbjct: 391 SSES 394


>At5g62080.1 68418.m07791 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           tapetum-specific protein a9 precursor {Brassica napus}
           SP|Q05772; contains Pfam protease inhibitor/seed
           storage/LTP family domain PF00234; supported by
           full-length cDNA Ceres:27795
          Length = 95

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 118 GKPRGNSCISSTTPTRTCLETYAKA*RLLPSTCLLQP 228
           G+P    C +  +  R CL    +A   LPS C L P
Sbjct: 52  GRPNSECCAALQSTNRDCLCNALRAATSLPSLCNLPP 88


>At5g13650.2 68418.m01585 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 676

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 340 LNTSPFSSRETKNVRR*HRGQRMNNE 417
           +NTSPFS RE K V   +   R+N E
Sbjct: 391 VNTSPFSGREGKYVTSRNLRDRLNRE 416


>At5g13650.1 68418.m01584 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 675

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 340 LNTSPFSSRETKNVRR*HRGQRMNNE 417
           +NTSPFS RE K V   +   R+N E
Sbjct: 390 VNTSPFSGREGKYVTSRNLRDRLNRE 415


>At2g20300.1 68415.m02371 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 744

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = +1

Query: 226 PTLFSRRYPWKLLWSRSKAGRKNSKFYYSSYNPH--PRPILNTSPFSSR 366
           P  F+R +P  L ++RSKA + +  F++   NP   P P    SP  SR
Sbjct: 21  PICFARLFPMSLPFTRSKAHQMH--FFHPYLNPSVAPTPSPAFSPNPSR 67


>At1g07705.1 68414.m00830 NOT2/NOT3/NOT5 family protein contains
           Pfam PF04153: NOT2 / NOT3 / NOT5 family; similar to Rga
           (GI:1658504) [Drosophila melanogaster]
          Length = 444

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -3

Query: 135 ISSRFPWSATRPTPRAWRGGLGSRVQVGLETS 40
           I++ FP   +RP+    +G LGSR++ GL  S
Sbjct: 135 INNDFPQLTSRPSSAGSQGQLGSRLKQGLGIS 166


>At3g51770.1 68416.m05677 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 958

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 235 RESAAKDMCLVTSVKPWRTF 176
           RE A  D+CL T + P RT+
Sbjct: 857 REMAQSDLCLATQLDPLRTY 876


>At1g51150.1 68414.m05750 DegP protease family contains similarity
           to DegP2 protease GI:13172275 from [Arabidopsis
           thaliana]
          Length = 219

 Score = 26.6 bits (56), Expect = 6.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -2

Query: 379 RSSFPARKMARCSR*VLDVDC--NCCNRIWSFSFQP 278
           RSSF A  ++RC   V DVD   +   +I+SFS +P
Sbjct: 34  RSSFNASLISRCCSSVSDVDVARDAVVKIFSFSREP 69


>At4g08940.1 68417.m01471 expressed protein 
          Length = 395

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 259 LLWSRSKAGRKNSKFYYSSYNPHPRPILNTSPFSS 363
           + W R  +    S    SS +P+P P   TSPFS+
Sbjct: 1   MAWLRFFSRTLKSLPQISSSSPNPNPNFRTSPFST 35


>At2g31550.1 68415.m03854 GDSL-motif lipase/hydrolase family protein
           similar to family II lipase EXL3 (GI:15054386), EXL1
           (GI:15054382), EXL2 (GI:15054384) [Arabidopsis
           thaliana]; contains Pfam profile PF00657:
           Lipase/Acylhydrolase with GDSL-like motif
          Length = 219

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 277 KAGRKNSKFYYSS-YNPHPRPILNTSPFSSRETK 375
           +A    SKF Y+  YNP    I N S +  +ETK
Sbjct: 128 EASLPGSKFLYADVYNPMMEMIQNPSKYGFKETK 161


>At2g31540.1 68415.m03853 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 360

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 277 KAGRKNSKFYYSS-YNPHPRPILNTSPFSSRETK 375
           +A    SKF Y+  YNP    I N S +  +ETK
Sbjct: 269 EASLPGSKFLYADVYNPMMEMIQNPSKYGFKETK 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,195,183
Number of Sequences: 28952
Number of extensions: 218806
Number of successful extensions: 662
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 655255392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)