Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A17
(559 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 29 0.61
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 1.1
SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 28 1.1
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 27 1.4
SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomy... 27 2.5
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.3
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 5.7
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 25 5.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 10.0
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 10.0
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 10.0
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 28.7 bits (61), Expect = 0.61
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 218 LPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADI 325
+ V D C+R D+ +P I +YQ +P + AD+
Sbjct: 77 MATVSEDKCLRLWDSTQPDKIELLYQKNIPKRCADL 112
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 27.9 bits (59), Expect = 1.1
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 255 VQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACL 112
V+R + SGS+ G S SA A S SLA + P+ A C+
Sbjct: 123 VRRLRTSGSSTGLSNAPPSANVSKASSNLSLASLAKTQPERATPEVCV 170
>SPCC736.02 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 286
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 320 DIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYL 448
DIV F ++ K + +T+LVD SK +T+I YL
Sbjct: 228 DIVFGFWNNIIEKRFSKSFIDSYLTRLVDIAISKNVTEIMYYL 270
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 27.5 bits (58), Expect = 1.4
Identities = 22/110 (20%), Positives = 47/110 (42%)
Frame = +2
Query: 125 IHAVSGTDAAKDLHQACDLARGYAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKV 304
+ + D A+D + + ++ LA L +PDA AD P +V +L
Sbjct: 1082 VEDIVSLDRAQDYAETVEQPEVWSRLAKAQLDGIRIPDAIESYLKADDPSNYSEVIELAS 1141
Query: 305 PNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAG 454
+ + ++ + ++ D+ L L+ K+ Q+T+++ +L G
Sbjct: 1142 RAGKYEELIKYLLMARSKMHEPDVDSAL---LIAYAKTNQLTEMETFLIG 1188
>SPAC11E3.13c |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 26.6 bits (56), Expect = 2.5
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Frame = -2
Query: 408 LSTNCVISGITRXXXXXXXXXXXSKETTISACLFGT---LS**TSPMA*GL-SASVQRTQ 241
++TN V + I++ S TT S+ + +S +S M+ SAS
Sbjct: 413 INTNIVQATISQSSTSGSSSGSSSASTTASSSSVSSGSSISSGSSSMSTSYTSASGSSAH 472
Query: 240 ASGSTAGSSPVRASAA-YPLARSQAWCKSLAAS 145
+SGS++GSS +SA+ + L+R + LA S
Sbjct: 473 SSGSSSGSSSATSSASTFNLSRFYVFAGILAIS 505
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 25.8 bits (54), Expect = 4.3
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 267 LSASVQRTQASGSTAGSSPVRASAAYPLARSQAWCKSLAASV 142
L S +R + ++ PVR S A R +W + LAA++
Sbjct: 627 LPNSKKRFSSFSGSSSKLPVRPSTALTDKRKPSWSRRLAAAI 668
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 5.7
Identities = 8/26 (30%), Positives = 16/26 (61%)
Frame = -1
Query: 307 WHFELINVSDGVRLVRVGAAHASVRQ 230
W +LIN++DG+ +++ H+ Q
Sbjct: 798 WSGDLINIADGIHEIKLQRVHSQDHQ 823
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 25.4 bits (53), Expect = 5.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -2
Query: 234 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTA 130
GS + PV+ S YP+A Q S+ +V DT+
Sbjct: 285 GSHNSAKPVQRSHTYPVAVPQNTSDSVGNAVTDTS 319
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 24.6 bits (51), Expect = 10.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 362 SYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYP 472
S+K +V PL TQL ++ + ITD++ + T+ +P
Sbjct: 1204 SFKRVVTPLGTQLRKDILNDSITDME-NTSSFTASFP 1239
>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 262
Score = 24.6 bits (51), Expect = 10.0
Identities = 23/104 (22%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Frame = -2
Query: 330 TTISACLFGTLS**TSPMA*GLSASVQRTQASGSTAGSSPVRAS--AAYPLARSQAWCKS 157
+TIS ++ + S ++ + +S T +S S++ S+P+ +S ++ + S + S
Sbjct: 127 STISGGIYSSTSASSTSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSS 186
Query: 156 LAASVPDTAWMHACLNGVISNNRLIGRSGEIPPNTCSQAGGRAA 25
A+S + A SN+ + G S + S AG ++
Sbjct: 187 SASSSGSISSADAKTVSASSNSTISGFSTSTTSASSSAAGNSSS 230
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 10.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 45 VNRCSEESPHFGQSVYY 95
+N CS +SP F S+YY
Sbjct: 19 LNECSIDSPSFRASMYY 35
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,430
Number of Sequences: 5004
Number of extensions: 41087
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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