Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A17
(559 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.48
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17) 31 0.84
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021) 29 2.6
SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35) 29 2.6
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6) 29 3.4
SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0) 28 4.5
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_18971| Best HMM Match : PWP2 (HMM E-Value=4) 28 5.9
SB_7095| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09) 27 7.9
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 31.5 bits (68), Expect = 0.48
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = -2
Query: 234 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNN 91
GS S + S PLA + +CK A VP+T W+ +G I N
Sbjct: 449 GSGKTSLLLTISGELPLASGELYCKGRVAYVPETPWL---FSGTIKEN 493
>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
Length = 1420
Score = 30.7 bits (66), Expect = 0.84
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +2
Query: 347 QSNEQSYKDLVMPLITQLVDNLKSKQITD 433
+ N+Q Y+DL +P+ + L N++ KQ+ +
Sbjct: 293 KGNKQQYRDLEIPISSDLAANMREKQVAE 321
>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
Length = 567
Score = 29.1 bits (62), Expect = 2.6
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -1
Query: 343 SFEGDDNICLLVWHFELINVSDGVRLVRVGAAHASVRQHSRQQSREGQRRVSSRQVTGLV 164
SF DD+ C + W DG V A+ + R SREG SS +V GL
Sbjct: 190 SFPWDDHHCRISWR------GDGQYFVVSAIEPATDARKLRVWSREGVLMTSSEEVDGLE 243
Query: 163 QVLSGVCSG 137
Q L SG
Sbjct: 244 QSLCWKPSG 252
>SB_35440| Best HMM Match : p450 (HMM E-Value=2.2e-35)
Length = 806
Score = 29.1 bits (62), Expect = 2.6
Identities = 35/146 (23%), Positives = 57/146 (39%), Gaps = 4/146 (2%)
Frame = +2
Query: 35 PPACEQVFGGISPLRPISLLLDITPFRQACIHAV---SGTDAAKDLHQACDLARGYAALA 205
PP C Q + + PLR + + I I V + K + L G
Sbjct: 238 PPECAQYYSPVQPLRSCAEFIMIAEAALVFIAVVVLANLVSLIKRKLSSLHLPPGPQPYP 297
Query: 206 LTGLLPAVL-PDACVRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYKDLVM 382
L G LP ++ P + T+ K + G +Y L +P +Q ++ S E + + KD
Sbjct: 298 LVGNLPHLVGPLMPLAMTELAKKY--GKIYSLTLPGQQCVVLNSSELAREALLTRKDEFS 355
Query: 383 PLITQLVDNLKSKQITDIKIYLAGHT 460
+ V + ++ D I A HT
Sbjct: 356 GRPSTFVGDFITRSSAD--IICADHT 379
>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 28.7 bits (61), Expect = 3.4
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +2
Query: 296 LKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHT 460
++V D+V FET +NE + + P V L K D K GHT
Sbjct: 1 MEVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHT 55
>SB_4050| Best HMM Match : VPEP (HMM E-Value=3.6)
Length = 569
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = +1
Query: 58 RRNLPTSANQSIIRYHTIQTSVHPRGVRNRRR 153
RRNLPT N S I + T R R RRR
Sbjct: 197 RRNLPTHDNTSTITPEAVATQAPQRRRRRRRR 228
>SB_49777| Best HMM Match : Peptidase_C1 (HMM E-Value=0)
Length = 298
Score = 28.3 bits (60), Expect = 4.5
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +3
Query: 6 TPTTRCTLLCHQPVNRCSEESPHFGQSVY 92
+PT +C C N + HFGQS Y
Sbjct: 206 SPTPKCERKCEAGYNVSYSDDKHFGQSAY 234
>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +2
Query: 416 SKQITDIKI-YLAGHTSKYPYPILYDTDLK-LKELQTT 523
S+QIT + LA +SK+P+P+L D L+ LK + +T
Sbjct: 2 SEQITCFLLPVLATPSSKFPFPVLVDAVLRMLKSMSST 39
>SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)
Length = 400
Score = 27.9 bits (59), Expect = 5.9
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +2
Query: 191 YAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYK 370
Y AL +T D C+ + D AIGD ++VP K+ DI S N +
Sbjct: 20 YKALTVTHKQSFKYNDTCLNYSSKDVVMAIGDA--IEVPLKEEDISTSHPLPSYNPNAPP 77
Query: 371 DLVMPLI 391
+++ +
Sbjct: 78 KIIVKFV 84
>SB_7095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 213 PVRASAAYPLARSQAWCKSLAASVPDTAWMHACLNGVISNNRL 85
P +SA +PLA +Q ++ + VP + +H +NG N +
Sbjct: 31 PWASSAGWPLAINQDNSSNINSLVPSISVLHISVNGEFHENNV 73
>SB_36243| Best HMM Match : 7tm_2 (HMM E-Value=2.2e-09)
Length = 1338
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 36 HQPVNRCSEESPHFGQSVYY*ISHHSDKRASTRCPEQTPL 155
H+P++ S F + + ++K S CPEQTP+
Sbjct: 684 HKPISPHGLSSKDFSLIFDFGENSRAEKTVSINCPEQTPI 723
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,422,992
Number of Sequences: 59808
Number of extensions: 344283
Number of successful extensions: 1084
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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