Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A15
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 31 0.12
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 1.9
SPCC622.12c |||NADP-specific glutamate dehydrogenase |Schizosacc... 27 2.6
SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces pom... 27 2.6
SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4 |Schiz... 26 3.4
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe... 26 4.5
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo... 25 5.9
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 5.9
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 25 7.8
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 25 7.8
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 31.1 bits (67), Expect = 0.12
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -3
Query: 459 RSQEDLDNGISGNIGLNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGIKLAIV 280
R QED + G N+ G E + E ++ L F G+ + +S + I+
Sbjct: 1109 RCQEDFERGWKANLPSGKAGEAEIMSDEYYVAAAIKRRGLGLVRFIGELFKLSMLSEKIM 1168
Query: 279 KECD*FLNDNIIDFNADEMKFLLRIRLQV 193
EC L N+ D +E++ L R+ + V
Sbjct: 1169 HECIKRLLGNVTDPEEEEIESLCRLLMTV 1197
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 439 IKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKIT 546
+ I L P ND + T WHKF++ WF +T
Sbjct: 416 LHIELAPAANDIQWHNTYIGRWHKFFQ-GWFITLVT 450
>SPCC622.12c |||NADP-specific glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 451
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 133 DPAFYQLYNRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 282
+P F Q Y IVG I + K + + +P+ K + I + V+E VT+ D
Sbjct: 6 EPEFQQAYKEIVGSIESSKLF-EVHPELKRVLPIISIPERVLEFRVTWED 54
>SPBC1271.01c |pof13||F-box protein Pof13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 207 IRLQVMLECVNVTH-NPVI*LIECRVSKCGLVKVKRTGHEGVLVEWF 70
I Q L+ + TH NPV EC +S+C L K G E L + F
Sbjct: 233 ILFQNALDALPTTHGNPV----ECDISRCPLNACKIAGQETELADLF 275
>SPBC31F10.11c |cwf4|syf3|complexed with Cdc5 protein Cwf4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 674
Score = 26.2 bits (55), Expect = 3.4
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +1
Query: 259 EKLVTFFDYSQFDATNSVFLTKKEIKTSYPHNFKVRQPRLNHKPFSVTID-VXSDIATD 432
E++V + QF+A + T+K + + P K R+ RL F +D + D ATD
Sbjct: 591 ERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR-RLEDGSFEEYLDYLFPDTATD 648
>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 4.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 458 LSTTXMDSPSHWKKTGINSTNWIG 529
LS + S+W++T ++ TNW+G
Sbjct: 208 LSVKAIIFASYWQQTVLSITNWLG 231
>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
Sir2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 5.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 31 YEIVARHVLGAAPKPFDKHTFMPSALDFYQTALRD 135
Y +ARH L + FD HTF + FY T RD
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY-TFARD 216
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = -3
Query: 414 LNVDGNTERLVVESWLTNLEVVWVTSLNLFFGQEYTVSGI---KLAIVKEC 271
LN+ TE ++ ++ +V V S N FFG + G+ K ++ ++C
Sbjct: 309 LNITRKTETILKSLKESSTPLVQVVSFNAFFGVMIAILGVQFFKASLNRQC 359
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.0 bits (52), Expect = 7.8
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +2
Query: 140 HSISYITGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SH 274
+S S I W T HSS+ +L R + S + ++ LRN H
Sbjct: 973 NSKSVIGENWTTCLHSSLVDNLGKYRKYDGSKILDILRVLRNKRH 1017
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +2
Query: 65 HLNHSTSTPSCPVRLTF--TKPHFETLHSISYITGLWVTLT 181
HL S STPS LTF T + T H LW L+
Sbjct: 605 HLIDSISTPSVCTSLTFAPTGDYLATTHVDQVGISLWTNLS 645
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,117
Number of Sequences: 5004
Number of extensions: 45737
Number of successful extensions: 130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -