Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A14
         (611 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC569.05c |||spermidine family transporter |Schizosaccharomyce...    26   3.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   4.9  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   4.9  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   8.6  

>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
 Frame = +3

Query: 318 YTPMAEFTG*RNPVV--SFGFGIYNTSL 395
           + P++E +G + P++   FGFGI+N S+
Sbjct: 190 WAPLSELSGRKLPLLIGMFGFGIFNISV 217


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = -3

Query: 213 SPVSVVNVLPAKPDM*EPRLCPIR*IASGLIPPFAIA 103
           +P+SV + +PA P +   RLC    IAS L PP A++
Sbjct: 133 APISVKSSIPAIPRVTFERLCYESAIASNL-PPNALS 168


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -3

Query: 384 YIFQSQN*PQGSFNP*TPPSVCITSTYLASVCLRRSSAGILLKQGPAGSSPDI 226
           Y+ +  N       P   P++ I    L S CL+ S AG+ L Q P G SP I
Sbjct: 634 YLMRLLNCILAQLQPSLYPNLEIFENVLKS-CLQ-SVAGVALSQSPIGESPII 684


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 127 THTALCHSREDFTELLSYEPNVRGRMEVQPTDERAAVQ 14
           THT +  S  + + LLSY  N  G    +P +   +++
Sbjct: 179 THTQVADSATESSPLLSYTGNHNGAGTSKPVNNHGSIE 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,944
Number of Sequences: 5004
Number of extensions: 49671
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)