Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A14
         (611 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0913 + 22540078-22540166,22540280-22540420,22541151-225412...    40   0.002
11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008     34   0.10 
07_03_1648 - 28382520-28382963,28383623-28383868                       29   3.8  
12_01_0562 - 4555384-4555673,4555775-4555883,4555981-4556084,455...    28   6.7  
06_03_0442 + 20837492-20837621,20841842-20842075,20842435-208425...    28   6.7  
11_08_0032 - 27807489-27807497,27807641-27807684,27808046-278081...    27   8.9  
06_01_1128 + 9300144-9300273,9300340-9300472,9300585-9300656,930...    27   8.9  

>08_02_0913 +
           22540078-22540166,22540280-22540420,22541151-22541281,
           22542278-22542460,22542555-22543195
          Length = 394

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +2

Query: 197 TTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTDA--KYVDVIHTDGGVY 340
           TT  GL +   + + PAGP F ++P     + TDA  K VD +H  GG++
Sbjct: 58  TTQGGLLISEGTVVSPAGPGFPHVPGIYNQEQTDAWKKVVDAVHAKGGIF 107


>11_08_0034 - 27827583-27827998,27828111-27829430,27829568-27831008
          Length = 1058

 Score = 33.9 bits (74), Expect = 0.10
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
 Frame = +2

Query: 14  LDGSSLIRWLYLHSTTYVRFIGEKLGEVLAAMAKGGMSPDAIHLIGHSLGSHISG-FAGK 190
           L GS    W  L   +Y+        +++    KG ++ + + L  ++L   I   FA  
Sbjct: 571 LVGSLPTSWGQLQLLSYLNLSQNTFNDLIPDSFKGLVNLETLDLSHNNLSGGIPKYFANL 630

Query: 191 TFTTLTGLQVGRISGLDPAGPCFSNI 268
           TF T   L    + G  P+G  FSNI
Sbjct: 631 TFLTSLNLSFNNLQGQIPSGGVFSNI 656


>07_03_1648 - 28382520-28382963,28383623-28383868
          Length = 229

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 248 PPDPVPISCRLEVRLAL*TSYQRNLICESRGCALSDESHRDSYR 117
           PP P P S   E R    T + ++L+   RGC + D +    YR
Sbjct: 12  PPSPPPPSTTSEQRKVF-TLWMKSLVLNGRGCTVYDSTGGIVYR 54


>12_01_0562 -
           4555384-4555673,4555775-4555883,4555981-4556084,
           4556643-4556946
          Length = 268

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 161 GSHISGFAGKTFTTLTGLQVGRISGL-DP 244
           G  + GFAG++     GL  GRI GL DP
Sbjct: 70  GVSVFGFAGESMAVKQGLLAGRIPGLSDP 98


>06_03_0442 +
           20837492-20837621,20841842-20842075,20842435-20842528,
           20842653-20842870,20842956-20843095,20843231-20843878
          Length = 487

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/26 (57%), Positives = 18/26 (69%)
 Frame = +2

Query: 146 IGHSLGSHISGFAGKTFTTLTGLQVG 223
           +G SL   ISG  GK  TTLTG++VG
Sbjct: 216 VGLSLARTISGATGK--TTLTGVEVG 239


>11_08_0032 -
           27807489-27807497,27807641-27807684,27808046-27808168,
           27810770-27810983,27811382-27811530,27811719-27812618,
           27812964-27814659
          Length = 1044

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
 Frame = +2

Query: 134 AIHLIGHSLGSHISG------FAGKTFTTLTGLQVGRISGLDPAGPCFSNI 268
           A+ L G++L S+I        F+  T+ T   L    + G  P+G  FSNI
Sbjct: 551 ALSLSGNNLSSYIPNGGIPKYFSNLTYLTSLNLSFNNLQGQIPSGGIFSNI 601


>06_01_1128 +
           9300144-9300273,9300340-9300472,9300585-9300656,
           9300783-9300926,9301453-9301524,9301584-9301677,
           9301782-9301928
          Length = 263

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = +2

Query: 125 SPDAIHLIGHSLGSHISGFAGKTFTTLTGLQVGRISGLDPAGPCFSNIPAELRLKHTD 298
           SPD++     + G H+SG    +   LT L+   +   + +GP  + I     LK  D
Sbjct: 80  SPDSLVTTLEAPGQHLSGLLAPSIGDLTNLETILLQNNNISGPIPAEIGKLANLKRLD 137


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,831,644
Number of Sequences: 37544
Number of extensions: 333452
Number of successful extensions: 792
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)