Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A14
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL132862-29|CAI79284.1|  109|Caenorhabditis elegans Hypothetical...    29   3.5  

>Z81073-9|CAB03030.2|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  LYLHSTTYVRFIGEKLGEVLAAMAKGGMSPD 133
           +YL   T+ R+IG  +G V  A+ K  + PD
Sbjct: 123 IYLEKDTFKRYIGSSIGVVTKALKKQMIIPD 153


>Z79752-7|CAC70084.1|  583|Caenorhabditis elegans Hypothetical
           protein F30F8.2 protein.
          Length = 583

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 41  LYLHSTTYVRFIGEKLGEVLAAMAKGGMSPD 133
           +YL   T+ R+IG  +G V  A+ K  + PD
Sbjct: 123 IYLEKDTFKRYIGSSIGVVTKALKKQMIIPD 153


>AL132862-29|CAI79284.1|  109|Caenorhabditis elegans Hypothetical
           protein Y73F8A.36 protein.
          Length = 109

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = +1

Query: 22  QLSHPLAVPPFDHVRSVHRREAR*SPRGYGKGRYESRC 135
           Q +H  ++P F   R V RR+AR    G+ +G +E+RC
Sbjct: 36  QKAHIKSLPKFTEKRKVLRRQARFI--GFQRGFFETRC 71


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,499,366
Number of Sequences: 27780
Number of extensions: 280967
Number of successful extensions: 614
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)