Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A12
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   0.91 
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    26   2.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   3.7  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   6.4  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   6.4  
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    25   8.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.4  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +3

Query: 15   LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 125
            LSI+ AK  TI  +  +  + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 155 LMTSYYFPFAQRPDNYXLHSVKNYEAIRFLD 247
           L+ SYY PF    DN  ++ V  YEA +  +
Sbjct: 20  LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +2

Query: 215 VKNYEAIRFLDLFEKTFVQSLQKGQFESYGQKID 316
           +   + +R ++L+E TF+   QK Q +S  ++ID
Sbjct: 583 INRLQRLRRMNLYEITFLSMKQKMQLKSLREEID 616


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 101 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 193
           G  P+  +Y P +  YYP   +Y  P   +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 44  NFYQQLTTRYYFERLTNGLGSIPEF 118
           NFY  +    YF   T G+ S+P F
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYF 150


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -2

Query: 193 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 65
           RP +  ++V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 30  RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +2

Query: 413 YEIVARHVLGAAPKPFDKHTFMPSALDFY 499
           Y  +ARH L    + FD HTF  +   FY
Sbjct: 183 YARLARHGLSEPSEMFDIHTFRENPEIFY 211


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 301 IRFELAFL*GLYESLFKKVQE 239
           +R +L+ L  LYE +F KVQ+
Sbjct: 716 VRLDLSELTALYEGMFAKVQD 736


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 301 IRFELAFL*GLYESLFKKVQE 239
           +R +L+ L  LYE +F KVQ+
Sbjct: 716 VRLDLSELTALYEGMFAKVQD 736


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,050,644
Number of Sequences: 5004
Number of extensions: 39874
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)