Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A12
         (500 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.076
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_52827| Best HMM Match : RnaseH (HMM E-Value=1)                      31   0.71 
SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)               29   2.2  
SB_6680| Best HMM Match : Astacin (HMM E-Value=0)                      27   8.7  
SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  

>SB_14881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 669

 Score = 33.9 bits (74), Expect = 0.076
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = -1

Query: 374 DRRSLPNSFRQS*CPVNRGNQFSAHTIRIGLSVGTVRKSFQKGPRTVLLRSSLRCVD 204
           +RR L  S R   CP N GN+F A T ++G+     ++S +K  R  LLRSS    D
Sbjct: 51  ERRQL-YSLRHQRCPSNSGNEFFAKTKQLGIFKYRGKQSGKK-HRNSLLRSSKNLAD 105


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = -1

Query: 335  CPVNRGNQFSAHTIRIGLSVGTVRKSFQKGPRTVLLRSSLRCVD 204
            CP N GN+F A T ++G+     ++S +K  R  LLRSS    D
Sbjct: 1018 CPSNSGNEFFAQTKQLGIFKYRGKRSGKK-HRDSLLRSSKNLAD 1060


>SB_52827| Best HMM Match : RnaseH (HMM E-Value=1)
          Length = 273

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
 Frame = +2

Query: 134 IKTGYYPLMTSYYFPFAQRPDNYX--LHSVKNYEA-IRFLDLFEKTFVQSLQKGQFESYG 304
           ++T + PL   +  P  + P      L  +  Y+  +R++   ++ F  SL +       
Sbjct: 140 VETDHKPLEAIFRKPLNECPPRLQRMLLKLTKYDLDVRYVPGKKQIFSDSLSRAPLTDTT 199

Query: 305 QKIDFHD*QGINFVGNYWAENADLYEEEVXKDYQRSYEIVARHVLGAAPKPFDK 466
           Q  +  D  GIN + N   EN+ L +         S  +V  +VL   P+  D+
Sbjct: 200 QVSEPEDVIGINLIENLGIENSTLKKFRDASSNDESSRVVMEYVLEGWPEDKDQ 253


>SB_19503| Best HMM Match : Kinesin (HMM E-Value=9.5e-14)
          Length = 869

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +3

Query: 15  LSIAVAKYITISTNN*QHVITS-SVLQTAWVPYLNSLGTRLLR 140
           + +A AKYI +S +  + VI + S    + +PY NS+ T +LR
Sbjct: 165 IQLAEAKYINVSLHFLEQVIVALSEKSRSHIPYRNSMMTSVLR 207


>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
          Length = 637

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 244 GPF*KDFRTVPTERPIRIVWAEN 312
           G +  ++  VPTE P R +W+EN
Sbjct: 581 GSWEANYLCVPTESPYRFLWSEN 603


>SB_56937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 24.6 bits (51), Expect(2) = 9.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -3

Query: 315 SIFCPYDSNWPF 280
           +I CPYD  WP+
Sbjct: 600 NITCPYDITWPY 611



 Score = 20.6 bits (41), Expect(2) = 9.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -3

Query: 303 PYDSNWPFCRDC 268
           PYD  WP+   C
Sbjct: 610 PYDITWPYDITC 621


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,294,538
Number of Sequences: 59808
Number of extensions: 284568
Number of successful extensions: 754
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)