Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A12
         (500 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24180.1 68417.m03470 pathogenesis-related thaumatin family p...    31   0.58 
At3g62160.1 68416.m06984 transferase family protein low similari...    29   1.8  
At5g61840.1 68418.m07759 exostosin family protein contains Pfam ...    28   3.1  
At5g22540.1 68418.m02630 expressed protein contains Pfam profile...    28   3.1  
At5g49850.1 68418.m06173 jacalin lectin family protein similar t...    28   4.1  
At5g28210.1 68418.m03416 mRNA capping enzyme family protein simi...    27   7.1  
At1g17460.1 68414.m02141 myb family transcription factor contain...    27   7.1  
At5g01770.1 68418.m00096 transducin family protein / WD-40 repea...    27   9.4  

>At4g24180.1 68417.m03470 pathogenesis-related thaumatin family
           protein similar to SP|P28493 Pathogenesis-related
           protein 5 precursor (PR-5) {Arabidopsis thaliana};
           contains Pfam profile PF00314: Thaumatin family
          Length = 255

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 154 GIVTSLNRRVPREFRYGTQAVCKT 83
           G VT LN++ P E R+G+ + CK+
Sbjct: 165 GCVTDLNQKCPTELRFGSGSACKS 188


>At3g62160.1 68416.m06984 transferase family protein low similarity
           to Taxus cuspidata transferases: 10-deacetylbaccatin
           III-10-O-acetyl transferase GI:6746554, taxadienol
           acetyl transferase GI:6978038,
           2-debenzoyl-7,13-diacetylbaccatin III-2-O-benzoyl
           transferase GI:11559716; contains Pfam profile PF02458
           transferase family
          Length = 428

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 151 IVTSLNRRVPREFRYGTQAVCKTLEVITCC 62
           I + L  R  REFR  T  +C   EVI  C
Sbjct: 224 IPSDLIERFKREFRASTGEICSAFEVIAAC 253


>At5g61840.1 68418.m07759 exostosin family protein contains Pfam
           profile: PF03016 exostosin family ;supported by cDNA
           gi|23821293|dbj|AB080693.1|;
          Length = 415

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 300 MGRKLISTINRALTLSETIGQRTPICMKK 386
           +GR ++  + RA TL +T GQR  +C+K+
Sbjct: 169 IGRGILPLLQRA-TLVQTFGQRNHVCLKE 196


>At5g22540.1 68418.m02630 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 440

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 227 EAIRFLDLFEKTFVQSLQKGQFESYGQKIDFHD*QGINFV 346
           EA   LDL  KTFV    + + + +  K  F+D + + FV
Sbjct: 217 EAKHLLDLIRKTFVPVPSQRRIKDHSSKSSFNDHEYLGFV 256


>At5g49850.1 68418.m06173 jacalin lectin family protein similar to
           myrosinase-binding protein homolog [Arabidopsis
           thaliana] GI:2997767; contains Pfam profile PF01419
           jacalin-like lectin domain
          Length = 596

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/59 (20%), Positives = 25/59 (42%)
 Frame = +2

Query: 17  KHRRGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 193
           K  +G     F ++ +    F   + G   +    WY+P+  GY   + ++++P    P
Sbjct: 386 KTSKGRTSRTFGERTSDSVEFVIESKGCAVVGFHGWYAPLGAGYITALGAHFYPMPLPP 444


>At5g28210.1 68418.m03416 mRNA capping enzyme family protein similar
           to mRNA capping enzyme [Xenopus laevis] GI:7239232;
           contains Pfam profiles PF01331: mRNA capping enzyme
           catalytic domain, PF03919: mRNA capping enzyme
           C-terminal domain
          Length = 625

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 278 QKGQFESYGQKIDFHD*QGINFVGNYWAENADLYEEEVXKDYQRSYEIVARHVL 439
           ++ +F+     + + + QG N   N    N D+  +E+  D + SY+    H+L
Sbjct: 234 EEAKFDDDDNALSYREVQGNNQEENVQLSNDDVLGDEIPYDQEVSYQNSINHML 287


>At1g17460.1 68414.m02141 myb family transcription factor contains
           Pfam PF00249: Myb-like DNA-binding domain
          Length = 604

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 237 GSWTFLKRLSYSPY 278
           G WT +K+LS+SPY
Sbjct: 517 GKWTEIKKLSFSPY 530


>At5g01770.1 68418.m00096 transducin family protein / WD-40 repeat
            family protein similar to WD-repeat protein mip1
            (SP:P87141) [Schizosaccharomyces pombe]
          Length = 1354

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +2

Query: 92   NGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYXLHSVKNYEAIRFLDLFE 256
            +GL +IP  +W +  +TG    +   + P     D      V NYE    L+ F+
Sbjct: 1004 SGLSNIPIANWDTKFETGTKTALLHPFSPIVVAADENERIRVWNYEEATLLNGFD 1058


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,540,140
Number of Sequences: 28952
Number of extensions: 198050
Number of successful extensions: 522
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)