Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A11
(319 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 0.69
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c... 27 0.91
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 2.1
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p... 25 3.7
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 24 4.8
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 24 4.8
SPAC637.03 |||conserved fungal protein|Schizosaccharomyces pombe... 24 4.8
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 24 6.4
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 24 6.4
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 23 8.5
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 23 8.5
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 0.69
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 247 YIVSSDRADREQNDQQRHDTTQNYVETRHVCDVDENSFKKN 125
+I++ + N Q + + N VET + D DENS N
Sbjct: 462 HIIADKNLEPTSNIQLKKNPDGNLVETSELSDSDENSVLSN 502
>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 0.91
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +2
Query: 176 VVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATA 292
++ GCV+ L ++ +S Y++ IF +LC +A
Sbjct: 696 MIFGCVIMQLTMMGLMSLRKAYWLSTVIFPLLCFTVISA 734
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.4 bits (53), Expect = 2.1
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = +2
Query: 149 DITNMSGFNVVLGCVMALLIILFTISSIARYYIKF 253
++ M GF +G +IL T+++ YY KF
Sbjct: 1718 ELLQMLGFTASIGSSELSQVILMTVTTKKEYYKKF 1752
>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 608
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 217 EQNDQQRHDTTQNYVETRHVCDVDENSFKKNL 122
E+N H T+N + +H + +NS K+ L
Sbjct: 16 EENHNSSHKVTENAKKRKHSKEKPQNSRKRQL 47
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 245 IKFTIFTILCLLFATAPMPLMLLR 316
IK TIF + LLF+ A +P M R
Sbjct: 454 IKTTIFPVSQLLFSNANVPAMCQR 477
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 4.8
Identities = 8/43 (18%), Positives = 21/43 (48%)
Frame = +2
Query: 176 VVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATAPMPL 304
V+ C++++LI+ T + F++ + + T P+ +
Sbjct: 407 VICNCIISILILFLTFAGTVTLDAVFSVGAVAAFIAFTVPIAI 449
>SPAC637.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 269
Score = 24.2 bits (50), Expect = 4.8
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 149 DITNMSGFNVVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATAPM 298
D N F+++ + + ++FT+ + R + +T F LCL ++ M
Sbjct: 75 DQVNDFTFSIIHTSIWYNVFVVFTVWAFTREKLYWTAFFSLCLFSSSFTM 124
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 23.8 bits (49), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -1
Query: 244 IVSSDRADREQNDQQRHDTTQNYVETRHVCDVDE 143
+V SD A E+N + D + NY T + V E
Sbjct: 543 VVFSDTASGEKNTKLNIDESTNYYNTDSIDKVGE 576
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +1
Query: 166 GFQRSFGLCHGAADHFVHD 222
GF+ SF L G +HF ++
Sbjct: 138 GFKESFALLPGGGNHFAYE 156
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 23.4 bits (48), Expect = 8.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -1
Query: 286 SK*QTQNSEYCKLYIVSSDRADREQNDQ-QRHDTTQNYVETRHVCDVDENSF 134
SK + +E C++ +++S + D E Q H+ T + V ++ VDE F
Sbjct: 38 SKRKRSVTECCEIRLITS-KCDFESTQQLVHHNCTGHKVHEHNLNAVDEEDF 88
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 23.4 bits (48), Expect = 8.5
Identities = 7/17 (41%), Positives = 14/17 (82%)
Frame = +1
Query: 205 DHFVHDQLYR*ILYKVY 255
DHF+H +++ +L+K+Y
Sbjct: 683 DHFIHLRVWYVLLHKIY 699
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,116,910
Number of Sequences: 5004
Number of extensions: 18240
Number of successful extensions: 81
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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