Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A11
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-9|CAB60400.1|  252|Caenorhabditis elegans Hypothetical ...    28   1.7  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   2.9  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical pr...    27   3.9  
U55363-1|AAK71420.1|  340|Caenorhabditis elegans Serpentine rece...    27   3.9  
AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical ...    26   6.8  

>AL117207-9|CAB60400.1|  252|Caenorhabditis elegans Hypothetical
           protein Y60A3A.15 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +2

Query: 143 FIDITNMSGFNVVLGCVMALLIILFTISSIARYYIKF-TIFTILCL 277
           F+ + + S FN+   C +  ++IL +  SIAR++  F  +F +L L
Sbjct: 6   FLSVFDTSSFNLYFKCFIYSIVILPSNFSIARFFHCFWVLFWVLQL 51


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
 Frame = +2

Query: 164 SGFNVVLGCV----MALLIILFTISSIARYYI 247
           S F+V+ G +    +AL++ LFT S I R+Y+
Sbjct: 144 SSFDVLFGAIGFLGIALILNLFTFSKILRFYL 175


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 140 FL*KKFNSINYTFNFIFLNQ--LICEYVHRCTL 48
           FL   FNS+ Y F+F F+N    I +Y+ R TL
Sbjct: 98  FLLAVFNSLKYIFSFHFMNSQTSIHKYLPRFTL 130


>Z35719-6|CAA84795.1| 1253|Caenorhabditis elegans Hypothetical
           protein F17C8.1 protein.
          Length = 1253

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = +2

Query: 131 FKGIFIDITNMSGFNVVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATAPMPLM 307
           + G+FIDI   +   V+ G V  + +  F +S IA  Y  F    IL L      +PL+
Sbjct: 770 YSGVFIDIIVATLIFVISGAVAIMSVRPFPLSLIA--YFPFAA-AILILTIVLIGLPLL 825


>U55363-1|AAK71420.1|  340|Caenorhabditis elegans Serpentine
           receptor, class h protein30 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +1

Query: 181 FGLCHGAADHFVH 219
           FGLCHGAA   VH
Sbjct: 287 FGLCHGAATTLVH 299


>AF016656-3|AAB66037.2|  515|Caenorhabditis elegans Hypothetical
           protein C35A11.4 protein.
          Length = 515

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/48 (25%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +2

Query: 170 FNVVLGCVMALLIILFTISSIARYYIKFTIFTILCL---LFATAPMPL 304
           F  +L C + +  ++FT      + + F +   +C+    FA  P PL
Sbjct: 340 FAGILVCNLIIFALMFTFYKFENHVLGFILICFICIFTFFFALGPGPL 387


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,120,610
Number of Sequences: 27780
Number of extensions: 99831
Number of successful extensions: 357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)