Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A11
         (319 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g60860.1 68416.m06808 guanine nucleotide exchange family prot...    28   1.6  
At1g66780.1 68414.m07591 MATE efflux family protein contains TIG...    27   3.6  
At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to ...    26   4.8  
At4g34400.1 68417.m04886 transcriptional factor B3 family protei...    25   8.3  
At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing...    25   8.3  
At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR) domai...    25   8.3  

>At3g60860.1 68416.m06808 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor, Homo
            sapiens, GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1793

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 161  MSGFNVVLGCVMALLIILFTISSIARYYIKF 253
            +SGF V +GC   L I +F + S+ +  +KF
Sbjct: 1137 LSGFFVTIGCSENLSIAIFAMDSLRQLSMKF 1167


>At1g66780.1 68414.m07591 MATE efflux family protein contains
           TIGRfam profile: TIGR00797: MATE efflux family protein,
           Pfam profile PF01554: Uncharacterized membrane protein
           family
          Length = 485

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = +2

Query: 140 IFIDITNMSGFNVVLGCVMALLIILFTISSIARY--YIKFTIFTILCLLFATAPMPLM 307
           I   +TN++GF+++ G   AL  +        ++     +T  ++LCLL    P+ L+
Sbjct: 77  IATSLTNVTGFSLIFGLAGALETLCGQAFGAGQFRNISAYTYGSMLCLLLVCFPISLL 134


>At5g40260.1 68418.m04884 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 239

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 158 NMSGFNVVLGCVMALLIILFTISSIARYYIKFTIFTILCLLFATA 292
           N+ GF + L  ++ + IIL T+ ++   ++K T   ++C +F  A
Sbjct: 103 NILGF-LALEVILVVAIILITLFALKGDFVKQTFVGVICDVFNIA 146


>At4g34400.1 68417.m04886 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 389

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = -1

Query: 232 DRADREQNDQQRHDTTQNYVETRHVCDVDENSFKK 128
           + +D E+++++  D+  +Y+ET    D++ENS  +
Sbjct: 211 ESSDDEEDEEE--DSDSDYIETFGQLDIEENSISE 243


>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
           protein / RanBP1 domain-containing protein contains Pfam
           profile PF00638: RanBP1 domain
          Length = 443

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 256 CKLYIVSSDRADREQNDQ 203
           CKLY+ SSD AD+   D+
Sbjct: 331 CKLYVKSSDPADKGWKDK 348


>At1g47370.1 68414.m05244 Toll-Interleukin-Resistance (TIR)
           domain-containing protein domain signature TIR exists,
           suggestive of a disease resistance protein.
          Length = 363

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 176 VVLGCVMALLIILFTISSIARYYIKFTIFTI 268
           +V+GC+    + L  + +   YY+KF+IF I
Sbjct: 197 LVVGCLAHQELPLVLVFTQVYYYVKFSIFFI 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,475,789
Number of Sequences: 28952
Number of extensions: 82974
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)