Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A10
         (137 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045...    26   4.8  

>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
            24804956-24805114,24805862-24805929,24806044-24806433,
            24806515-24806563,24806636-24806788,24807416-24807589,
            24808207-24808362,24808705-24808756,24808830-24808988,
            24809058-24809094,24809218-24809252,24809349-24809400,
            24809614-24809663,24810590-24811924,24812688-24812825,
            24812907-24812957,24813081-24814237
          Length = 1625

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 117  SPKFSFGSGISIWERG 70
            SPKFS G G S W +G
Sbjct: 1002 SPKFSSGDGPSSWNKG 1017


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,396,656
Number of Sequences: 37544
Number of extensions: 18014
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 14,793,348
effective HSP length: 26
effective length of database: 13,817,204
effective search space used: 262526876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)