Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A09
         (372 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   3.8  
SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|ch...    25   3.8  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   5.0  
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    25   5.0  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   5.0  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    24   6.7  
SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3 |Schizosacc...    24   8.8  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 271 HSPSPTFR-SVSLCSQL*LFMTQTLPKDFGFSPFLLAQ 161
           H   P F  + +L  QL +F   + PKD GFS  L +Q
Sbjct: 99  HPFYPVFEVNSNLYYQLLMFTNYSNPKDNGFSKLLFSQ 136


>SPCC550.01c |||CHCH domain protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 77

 Score = 25.0 bits (52), Expect = 3.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 236 QRYTAESRRWRVCWFRRNSPLLI*TTKPQWNLS 334
           ++ T +   +R CW +R+ PL   + K   NLS
Sbjct: 45  RKCTEQMEEFRKCWEKRHGPLPSISDKKNKNLS 77


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2244

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 286 PSEPAHSPSPTFRSVS 239
           P EP  SPSP F SV+
Sbjct: 35  PKEPTCSPSPAFYSVN 50


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 231 HSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSRED 124
           H  +YS +   +R   S  SY RRS    R Y+R D
Sbjct: 218 HYDSYSSYDELERRRSSNESYSRRSELPRRDYNRHD 253


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +2

Query: 26  NSHYFCLIGGRQLP 67
           NSHY CL GG   P
Sbjct: 460 NSHYSCLFGGSPSP 473


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -1

Query: 168 WRRSVRTSRWYSREDTLSYVP 106
           W++ V    WY     LS+VP
Sbjct: 597 WQKKVERKLWYLTNSKLSFVP 617


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 5   CGKNEGGNSHYFCLIG 52
           C +NEG NS +F  +G
Sbjct: 103 CTENEGNNSQFFITLG 118


>SPBC651.11c |apm3||AP-3 adaptor complex subunit Apm3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 425

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 168 WRRSVRTSRWYSREDTLSYVPP 103
           + +SV   RW    D + ++PP
Sbjct: 232 FHQSVNLKRWKQHPDQIEFIPP 253


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,399
Number of Sequences: 5004
Number of extensions: 30611
Number of successful extensions: 79
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)