Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A09
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 30 0.67
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513... 30 0.67
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37... 29 1.2
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480 28 2.0
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 27 3.6
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 27 3.6
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548... 27 4.7
02_04_0563 - 23895573-23895614,23896330-23896390,23896901-238970... 27 6.2
07_03_0965 - 22996575-22999112,22999202-22999636,22999717-229998... 26 8.2
06_03_0441 - 20820121-20820296,20820554-20820613,20820751-208208... 26 8.2
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 29.9 bits (64), Expect = 0.67
Identities = 22/71 (30%), Positives = 30/71 (42%)
Frame = -1
Query: 258 RLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSYVPPPLSIALNQ 79
R +Y + S+ Y C V + S W RS + W E T PP + AL
Sbjct: 197 RCKILYYSIFSWLYGLVGSCAHL-VMVNSSWTRSHIENIWRIPERTRRVYPPCDTSALQM 255
Query: 78 VCLDGS*RPPI 46
+ L+ S PPI
Sbjct: 256 LPLERSTTPPI 266
>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
5139967-5140289,5141373-5142479,5142593-5143279,
5144214-5144522,5145488-5145823,5146165-5146263,
5146676-5146940,5146950-5147104,5147666-5149723,
5150168-5150367,5150662-5150718,5150965-5151079
Length = 1985
Score = 29.9 bits (64), Expect = 0.67
Identities = 20/73 (27%), Positives = 38/73 (52%)
Frame = +3
Query: 72 DKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLR 251
D+P +K K++ K + +C++V EP K + P F +C N +K+T++
Sbjct: 1638 DEPKVKVTKSDTKEKDSL--ECSSV-IEPSSDRKLMQCPYDFEEICRKFVTNDSNKETVK 1694
Query: 252 KVGDGECAGSDGI 290
++G GS+G+
Sbjct: 1695 QIG---LNGSNGV 1704
>11_01_0049 -
375049-375342,375596-375660,375907-375956,376492-376541
Length = 152
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 45 LLVAVSCRPDKPDLKQLKAEAARK--KACLHDCTNVK 149
L + SC+P + DL L AEA+RK K+ H C +K
Sbjct: 88 LKIVPSCQPSRKDL--LSAEASRKGTKSIDHPCNTIK 122
>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
Length = 623
Score = 28.3 bits (60), Expect = 2.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = -1
Query: 171 YWRRSVRTSRWYSREDTLSYV 109
YW+ +++TS WY++ T S+V
Sbjct: 475 YWQPTMKTSDWYTKSCTYSWV 495
>08_02_1091 +
24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 27.5 bits (58), Expect = 3.6
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 114 KKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKD 242
++AC +C+N + C + +P S G + + N NC D
Sbjct: 729 QQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFD 771
>04_04_0329 +
24449574-24449633,24450261-24450320,24450510-24450562,
24450913-24450973,24451481-24451666,24451877-24451984,
24452196-24453418,24453571-24454405
Length = 861
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Frame = +3
Query: 60 SCRPDKPDLKQLKAEAARKKACL--HDCTNVKFEPICAS---KNGEKPKS 194
S PD P LK L+ + CL + + V FE CA K+G K S
Sbjct: 416 SAPPDSPKLKYLRISSLNSSKCLVTNGVSTVLFEDTCAEDDIKDGGKVAS 465
>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
34355193-34355261,34355502-34355606,34355992-34356161,
34356244-34356351,34356397-34356525,34356577-34356681,
34357186-34357475,34357575-34357679,34358195-34358289,
34358474-34358569,34358660-34358782,34359120-34359174,
34359254-34359417,34359881-34359971,34360180-34360334,
34360823-34361002,34361314-34361487,34361776-34361917,
34362023-34362325,34362443-34362522
Length = 1354
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 313 CSLN*ERRIPSEPAHSPSPTFR 248
CS +R PS PA PSP F+
Sbjct: 1287 CSAEWRKRWPSPPARQPSPGFK 1308
>02_04_0563 -
23895573-23895614,23896330-23896390,23896901-23897025,
23897217-23897302,23898052-23898167,23898274-23898336,
23898451-23898530,23898751-23898871,23899419-23899501,
23900081-23900155,23900436-23900936
Length = 450
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 129 EDTLSYVPPPLSIALNQVCLDGS*RPPIRQK**EFPPSFFP 7
E T ++ P P A +CL+G RPP + K P ++P
Sbjct: 378 EGTHAFHPKPPEEAAKMICLEGM-RPPFKNK-----PKYYP 412
>07_03_0965 - 22996575-22999112,22999202-22999636,22999717-22999801,
22999888-22999957,23000050-23000293,23000396-23000482,
23000655-23000706,23000830-23001226,23001324-23001648,
23001748-23001914,23002007-23002547
Length = 1646
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 198 QRTSVSLRSYWRRSVRTSRWYSREDTLSYVPPPLSIALN 82
+R + Y S + S +SR+D SYVPP LS + N
Sbjct: 1156 ERKKSAAAKYPGDSQQHSLSFSRQDNKSYVPPFLSGSTN 1194
>06_03_0441 -
20820121-20820296,20820554-20820613,20820751-20820859,
20820938-20821041,20821387-20822101,20822580-20822719,
20823342-20823672
Length = 544
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 6 VEKMKAETLIIFVLLVAVSCRPDKPDLKQL 95
V K++ ++FV AV+ RP + +LKQ+
Sbjct: 500 VTKLEMRKRLVFVCKYAVNARPSRGNLKQV 529
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,240,678
Number of Sequences: 37544
Number of extensions: 206378
Number of successful extensions: 541
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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