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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A09
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    35   0.016
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    31   0.20 
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    31   0.20 
U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical pr...    30   0.61 
U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical pr...    30   0.61 
U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein ...    29   1.4  
AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 prote...    29   1.4  
Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical pr...    27   3.2  
AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D sp...    27   3.2  
AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D pr...    27   3.2  
AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1 iso...    27   3.2  
AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1 iso...    27   3.2  
AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1 iso...    27   3.2  
AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1 iso...    27   3.2  
AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C pr...    27   3.2  
U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily ass...    27   4.3  
U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily ass...    27   4.3  
Z81074-9|CAB03040.1|  223|Caenorhabditis elegans Hypothetical pr...    26   7.5  
U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of s...    26   7.5  
Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr...    26   9.9  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    26   9.9  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    26   9.9  

>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
           protein F29G6.1 protein.
          Length = 1170

 Score = 35.1 bits (77), Expect = 0.016
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 84  LKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCE 233
           L +L       K C H+CTN +F+P+C   NG     + ++CV     CE
Sbjct: 102 LTKLHMGRCSSKDCNHNCTNTEFDPVC-DTNG---SVYRNLCVFQMRRCE 147



 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 81  DLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKD 242
           D+    A  ARK  C+    + K  PIC ++N   P    ++C    YNCE ++
Sbjct: 294 DIAHSGACRARKSTCITCPKDEKKIPICDNRNMTHP----TLCSFIQYNCEARN 343


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 93  LKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 272
           +K +   +  C + C +V   P+CA+ NGE   +F + C M   +CE K  ++    G C
Sbjct: 383 VKPDRTAECECPNRCEDV-MRPVCAT-NGE---TFDNECEMKKKSCETKSMIKVKHQGTC 437


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 31.5 bits (68), Expect = 0.20
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +3

Query: 93  LKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 272
           +K +   +  C + C +V   P+CA+ NGE   +F + C M   +CE K  ++    G C
Sbjct: 391 VKPDRTAECECPNRCEDV-MRPVCAT-NGE---TFDNECEMKKKSCETKSMIKVKHQGTC 445


>U40030-4|AAS80338.1|  909|Caenorhabditis elegans Hypothetical
           protein T13C2.6a protein.
          Length = 909

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 132 DCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRK--VGDGECAGSDG 287
           DCTN K E  C SK         S C  NN+ C + + + K  V DGE   SDG
Sbjct: 149 DCTNGKDEQNCTSKT--------SKCPDNNFQCSNGNCIFKNWVCDGEEDCSDG 194


>U40030-3|AAS80339.1|  911|Caenorhabditis elegans Hypothetical
           protein T13C2.6b protein.
          Length = 911

 Score = 29.9 bits (64), Expect = 0.61
 Identities = 22/54 (40%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +3

Query: 132 DCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRK--VGDGECAGSDG 287
           DCTN K E  C SK         S C  NN+ C + + + K  V DGE   SDG
Sbjct: 151 DCTNGKDEQNCTSKT--------SKCPDNNFQCSNGNCIFKNWVCDGEEDCSDG 196


>U00048-1|AAB53825.2|  425|Caenorhabditis elegans Lethal protein 756
           protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 345 CIYNERFH*GFVV*IKRGEFRRNQHTRHRRLSAVYLCVH 229
           C Y +RF+  ++   + G+ RR  +++ RR ++ +L VH
Sbjct: 172 CAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVH 210


>AJ010553-1|CAA09234.1|  425|Caenorhabditis elegans LET-756 protein
           protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -1

Query: 345 CIYNERFH*GFVV*IKRGEFRRNQHTRHRRLSAVYLCVH 229
           C Y +RF+  ++   + G+ RR  +++ RR ++ +L VH
Sbjct: 172 CAYGDRFNPWYIELRRSGKPRRGPNSKKRRKASHFLVVH 210


>Z68749-7|CAA92962.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 530 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 579

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 580 LGSFKCHSIDCPTNYIH 596


>Z68749-6|CAC35818.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>Z68749-5|CAC35817.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>Z68219-9|CAA92483.2|  728|Caenorhabditis elegans Hypothetical
           protein F56H11.1c protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 530 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 579

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 580 LGSFKCHSIDCPTNYIH 596


>Z68219-7|CAC35827.1|  689|Caenorhabditis elegans Hypothetical
           protein F56H11.1b protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>Z68219-6|CAC35826.1|  712|Caenorhabditis elegans Hypothetical
           protein F56H11.1a protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>AY851363-1|AAW34127.1|  728|Caenorhabditis elegans fibulin-1D
           splice variant protein.
          Length = 728

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 530 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 579

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 580 LGSFKCHSIDCPTNYIH 596


>AF070477-1|AAC24035.1|  589|Caenorhabditis elegans fibulin-1D
           precursor protein.
          Length = 589

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 391 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 440

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 441 LGSFKCHSIDCPTNYIH 457


>AF051403-2|AAC28323.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>AF051403-1|AAC28324.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>AF051402-1|AAC28322.1|  712|Caenorhabditis elegans fibulin-1
           isoform C precursor protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>AF051401-1|AAC28321.1|  689|Caenorhabditis elegans fibulin-1
           isoform D precursor protein.
          Length = 689

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>AB212860-1|BAD98165.1|  712|Caenorhabditis elegans fibulin-1C
           protein.
          Length = 712

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
 Frame = +3

Query: 123 CLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAGSDGI---R 293
           C+  C N K   +C    G K +  G  CV           + +   GECAGSD +    
Sbjct: 491 CMGGCINTKGSYLCQCPPGYKIQPDGRTCV----------DVDECAMGECAGSDKVCVNT 540

Query: 294 LS*FKLQNLNGIFRYIY 344
           L  FK  +++    YI+
Sbjct: 541 LGSFKCHSIDCPTNYIH 557


>U61957-3|AAX55702.1|  395|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform a protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 269 VCWFRRNSPLLI*TTKPQWNLSLYIQNMTFFSN 367
           +CWF   + LL+   KP+ N   YI  + FFS+
Sbjct: 282 LCWFPLETYLLLNELKPEINGWKYINLVFFFSH 314


>U61957-2|AAX55703.1|  386|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 49, isoform b protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 269 VCWFRRNSPLLI*TTKPQWNLSLYIQNMTFFSN 367
           +CWF   + LL+   KP+ N   YI  + FFS+
Sbjct: 273 LCWFPLETYLLLNELKPEINGWKYINLVFFFSH 305


>Z81074-9|CAB03040.1|  223|Caenorhabditis elegans Hypothetical
           protein F32B6.4 protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = -1

Query: 276 QHTR-HRRLSAVYLCVHSYNY 217
           QHT+  RRLS +  C HSY Y
Sbjct: 179 QHTQMFRRLSDLVRCYHSYRY 199


>U50311-10|AAA92314.1|  135|Caenorhabditis elegans Inhibitor of
           serine protease likeprotein protein 2, isoform a
           protein.
          Length = 135

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 99  AEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLRKVGDGEC 272
           A A   K C  +   V     C  + G  PK+    C+MN   C+ KD   +   G+C
Sbjct: 12  AVATATKTCEANEELVSCHNTCEPQCGYTPKACTEQCIMN--TCDCKDGFVRNSLGKC 67


>Z68215-7|CAA92453.1|  289|Caenorhabditis elegans Hypothetical
           protein C53B4.5 protein.
          Length = 289

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 180 EKPKSFGSVCVMNNYNCEHKDTLRKVGDGECAG 278
           E  K +G V  + +    H  T R+VG+G+C G
Sbjct: 56  EAKKLWGDVNRVPDMVMAHNRTARQVGNGQCEG 88


>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
           protein B0207.5 protein.
          Length = 3279

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
 Frame = +3

Query: 81  DLKQLKAEAARK--KACL---HDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDT 245
           D ++L  +  R+  K CL    DC NV  +      + E  + F S CV   +NC+    
Sbjct: 410 DARKLTQKQYRRFEKVCLKDTQDCRNVNMK----DHSDEDYEKFRSDCVRREFNCDSVGN 465

Query: 246 LRKVGDGE 269
           + ++ + E
Sbjct: 466 VDQLSEDE 473


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 102 EAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVC 209
           E A+   C H C NVK    C  + G +    G  C
Sbjct: 297 ECAKNNGCEHFCENVKGTYRCKCREGYQLGRDGRTC 332


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +3

Query: 102 EAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVC 209
           E A+   C H C NVK    C  + G +    G  C
Sbjct: 297 ECAKNNGCEHFCENVKGTYRCKCREGYQLGRDGRTC 332


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,875,852
Number of Sequences: 27780
Number of extensions: 182595
Number of successful extensions: 490
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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