Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A08
         (492 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55238| Best HMM Match : Serpin (HMM E-Value=0)                      34   0.055
SB_38975| Best HMM Match : Serpin (HMM E-Value=0)                      32   0.22 
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   29   2.1  
SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)                      28   3.6  
SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)                       28   3.6  
SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.4  
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)            27   8.4  
SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)                27   8.4  

>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 345

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 14/55 (25%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
 Frame = +2

Query: 332 TMANKIYVGNKYTLDEKFT-ITVRQYQSEVETIDF-SDTKKAADIINQWANEKTE 490
           ++AN +++   +++ ++FT I  + Y +++  +D+ +D + A   +NQW  E+T+
Sbjct: 51  SIANNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTK 105


>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
          Length = 380

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 22/115 (19%), Positives = 55/115 (47%), Gaps = 3/115 (2%)
 Frame = +2

Query: 155 NVVSSPLGVMMLMLLYKAGAGEGSRAEIDK-FLGNGDYSGVANPYISLSKTFSEMNPDYF 331
           N+  SP  +++ + +   GA   +  ++ K F    D     + ++      S  + +  
Sbjct: 29  NLFYSPASIVVALAMTYLGARGNTATQMTKTFHFPTDVPEKFHDFLQALNA-SNSDGNQI 87

Query: 332 TMANKIYVGNKYTLDEKFTITVRQ-YQSEVETIDF-SDTKKAADIINQWANEKTE 490
            MAN+++    + + E+F    ++ + +E+  +D+  ++  A D +N+W  +KT+
Sbjct: 88  LMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKTK 142


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = -1

Query: 258 PLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 124
           PLP + + +   PS +PA Y S + +T  G  +TF   D+ ++SL
Sbjct: 235 PLPTSATPTGTTPSVSPATYSSPTPVTIQG--STFTFDDNAFLSL 277


>SB_27357| Best HMM Match : MFMR (HMM E-Value=3.2)
          Length = 468

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 260 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 406
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69


>SB_1509| Best HMM Match : SRR (HMM E-Value=0.22)
          Length = 644

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 260 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKFTITVRQY 406
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + +    + Y
Sbjct: 19  NYSTLSRNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSKNY 69



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 14/50 (28%), Positives = 32/50 (64%), Gaps = 3/50 (6%)
 Frame = +2

Query: 260 DYSGVANPYISLSKTFSEMNPDYFTMA-NKIYVGNKY-TLDEKF-TITVR 400
           +YS ++  Y++LSK +S ++ +Y T++ N   +   Y TL + + T++++
Sbjct: 112 NYSTLSKNYLTLSKNYSTLSKNYLTLSKNYSTLSKNYLTLSKNYLTLSIK 161


>SB_51901| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 22/95 (23%), Positives = 33/95 (34%)
 Frame = +2

Query: 203 KAGAGEGSRAEIDKFLGNGDYSGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEK 382
           K G G G   E+   + N   +        L    S  N       +K+Y+   + +D  
Sbjct: 120 KHGFGYGKNGEVILVMPNERLNIKKIMVFELFSVLSGYNFLRILKVDKVYLKKLFLMDNA 179

Query: 383 FTITVRQYQSEVETIDFSDTKKAADIINQWANEKT 487
           F+    +  S VET  F +        N  AN  T
Sbjct: 180 FSTVPGEANSNVETQSFIEASVETFTENMLANHAT 214


>SB_49251| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1560

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = -2

Query: 263 NLHCLKTCRSPHDYLHRRQLCTEALASSRLMVKTQHSCPSMMYTFP*ETAKK 108
           N  C +TCR+P +Y    +LC     S     K  ++ P     F    AKK
Sbjct: 620 NAQCRQTCRTPPNY---AELCGSLWISRITRKKPNYALPHKRVAFSNSQAKK 668


>SB_46575| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 241

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/93 (21%), Positives = 39/93 (41%)
 Frame = -1

Query: 303 VLLKLMYGLATPL*SPLPKNLSISARLPSPAPALYRSISIITPNGEDTTFLSFDDVYVSL 124
           V+ + M G+  P+ +P    ++    +P+  P L  +I  +T    +TT L    ++   
Sbjct: 131 VIPQAMPGMVPPVMAPAGAPIAAPMAIPTQQPDLPNNILFLTNLPMETTELMLSMLFNQF 190

Query: 123 RNCKEVLSMASPKAVLLYSWSEE*NARTLQTAI 25
              KEV  +     +    +  E  A T + A+
Sbjct: 191 PGFKEVRLVPGRSDISFVEFENEVQAGTAKDAL 223


>SB_2329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1181

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +2

Query: 266 SGVANPYISLSKTFSEMNPDYFTMANKIYVGNKYTLDEKFTITVRQYQSEVETIDFSDTK 445
           S    P+I +  T    NP++F ++    +  + T DE + +    + ++   I    +K
Sbjct: 279 SNATTPFIVIQNTLEVKNPNFFEVSLSA-LNQQVTWDEHYVVADVSFGNQSVVIPRRSSK 337

Query: 446 KAADI--INQWAN 478
           K   +  +NQ+ N
Sbjct: 338 KMEGLHDMNQYLN 350


>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
          Length = 1371

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 89  GDAIDKTSLQFLKETYTSSKDKNVV 163
           G  IDK+ ++ +K+T  +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284


>SB_36451| Best HMM Match : AIRS_C (HMM E-Value=1.1e-27)
          Length = 665

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 89  GDAIDKTSLQFLKETYTSSKDKNVV 163
           G  IDK+ ++ +K+T  +S D NV+
Sbjct: 260 GQEIDKSLMRMVKDTQITSNDNNVI 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,978,617
Number of Sequences: 59808
Number of extensions: 307818
Number of successful extensions: 883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)