Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0003_A07
(648 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce... 36 0.005
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 27 3.1
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 27 3.1
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom... 27 3.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 5.4
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 26 5.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 5.4
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.4
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p... 26 5.4
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 25 7.1
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce... 25 7.1
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 25 9.4
>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 242
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/46 (39%), Positives = 25/46 (54%)
Frame = +3
Query: 174 PEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRKYGLAGADLEED 311
P +P G+ P++ DG Y +S AI +L RKYG + EED
Sbjct: 40 PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 528 GMFDYLKSMLQEPTLEEKYPIFKKTIDTVLSL 623
G+F+ S L+ L +++P+ K+T+D ++ +
Sbjct: 224 GLFEQTISCLEMSGLTKEWPVLKETVDELIDI 255
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 378 EKDEAVKAKKLAEFRETKYQFLIEKLNEILQK 473
EKD+ KLAE + +F+I + N+IL K
Sbjct: 485 EKDKENGDAKLAELAKIVNRFIIRRTNDILSK 516
>SPBC17D1.02 |||diphthamide biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/53 (24%), Positives = 28/53 (52%)
Frame = +3
Query: 255 ISRYLGRKYGLAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLA 413
+ + +G + G DL E +EI++ V+F+ N+ A+ + + + K+A
Sbjct: 19 LEKEIGETVKIEG-DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVA 70
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/53 (28%), Positives = 26/53 (49%)
Frame = +3
Query: 120 LAYGGQEFEDKRISMDQWPEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRK 278
L Y E++ + S + +I P G +P L +DG Y + I+ Y+ R+
Sbjct: 672 LVYPYDEYQLEASS--HFSQISNTEPMGCLPELGLDGYGYKLFVPINEYIPRR 722
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -2
Query: 536 EHTGEDEIAPSQLSKSDVAAVLLEYFI-QFLNEELVFGLAEFCQFLGFHRLVFLVMDGGG 360
EH I +++K V E I + + + V L +F + F+ LV + +GG
Sbjct: 89 EHVAVKVIRKYEMNKKQRQGVFKEVNIMRRVKHKNVVNLFDFVETEDFYHLVMELAEGGE 148
Query: 359 VCTNIVKELHVLINLEVFL*VCTSEAV 279
+ IV + NL + + +EAV
Sbjct: 149 LFHQIVNFTYFSENLARHIIIQVAEAV 175
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 5.4
Identities = 30/139 (21%), Positives = 62/139 (44%)
Frame = +1
Query: 127 TAGRNSKTNAYQWTNGLKSSPRPRSVKCRCWKLTVNSTLRASPSAGTSVASTASLVQT*R 306
T +S ++ + +SP S + +S+ +S S+ +S +S++S +
Sbjct: 135 TTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 194
Query: 307 KTSRLIRTWSSLTIFVQTPPPSITRKTRR*KPRNWQNSARPNTSSSLRN*MKYSRRTAAT 486
+S + SS ++ + T S + + + +S+RP++SSS M S +
Sbjct: 195 SSSSSSSSSSSSSVPI-TSSTSSSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTV 253
Query: 487 SLLES*LGAISSSPVCSIT 543
++ S + +SS V S T
Sbjct: 254 TVTPSSSSSSTSSEVPSST 272
>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 117
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 177 EIKPKTPFGQMPLLEIDGK 233
E+K ++P GQ P LE DG+
Sbjct: 11 ELKDESPIGQSPHLENDGR 29
>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 248
Score = 25.8 bits (54), Expect = 5.4
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Frame = -2
Query: 434 VFGLAEFCQFLGFH--RLVFLVMDGGGVCTNIVKEL-HVLINLEVFL*VCTSEAVLATEV 264
+ G E C+F F+ R T +V + VL EVF EA+ +E
Sbjct: 172 LLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVNTMVKVLRGTEVFTEQQKEEALKRSEN 231
Query: 263 PADGDALSV 237
PAD D L+V
Sbjct: 232 PADNDFLAV 240
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 7.1
Identities = 20/75 (26%), Positives = 30/75 (40%)
Frame = +3
Query: 285 LAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLAEFRETKYQFLIEKLNEI 464
LA D E E+D N ++ V+Y E + +L R Q +L
Sbjct: 93 LANRDWEHSLELDPNNTYIQKSLHRLKEVYYIYRECAETWQLRHLRVASSQ----QLPVG 148
Query: 465 LQKNGGHIALGKLTW 509
L+K +I GK+ W
Sbjct: 149 LRKQYPNIIRGKIWW 163
>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 288 AGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEA 392
+ +D EE+ E+D N + L I A H E A
Sbjct: 30 SSSDSEEESELDTNKQALEHINAQKNITHNENKSA 64
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 211 RCWKLTVNSTLRASPSAGTSVASTASLVQT*RKTSRLIRTWSSLTIFVQTPPPSITRKTR 390
RC + + TLR ++G S + S+ ++S +I S T + + P S+ R
Sbjct: 391 RCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHS-TSLLSSQPCSLCGFNR 449
Query: 391 R*KPRNWQNSARPNTSS 441
R ++ +RP+++S
Sbjct: 450 TQPLRQFEFRSRPDSTS 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,554,985
Number of Sequences: 5004
Number of extensions: 52025
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -