Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A06
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0179 - 6201393-6202365,6202470-6202610,6202728-6202767,620...    31   0.71 
02_01_0675 - 5028910-5030379                                           30   1.6  
11_06_0708 + 26475306-26478404                                         28   6.7  
11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166     28   6.7  

>03_02_0179 -
           6201393-6202365,6202470-6202610,6202728-6202767,
           6204390-6204791,6205567-6205696
          Length = 561

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
 Frame = -3

Query: 553 RNITLGKTGMFYNIGLLAH-IFKNMNLLILKQHC--CEIKIAIVINDFSIF*TLQSYNNI 383
           R +T+   G+F+ +G++ +   +N+ +LI+ +    C +  A   ++F I  +LQ+Y+ I
Sbjct: 107 RRLTMLIAGVFFIVGVIFNGAAQNLAMLIVGRILLGCGVGFANQASNFPIILSLQAYSII 166

Query: 382 SFXFINLTLK 353
           SF  I+  +K
Sbjct: 167 SFHIISYGVK 176


>02_01_0675 - 5028910-5030379
          Length = 489

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = -3

Query: 313 IPRG*VLIGGVAPILGHLHPTKPILVARRL*TSPLAARSLV 191
           +P+  V IGG A   G +HP+   +VAR L T+P+ A ++V
Sbjct: 332 LPQRVVGIGGTA---GMVHPSTGYMVARTLATAPIVADAIV 369


>11_06_0708 + 26475306-26478404
          Length = 1032

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124  IESCRGCSL-NRLPQVKRFVMDDAPNYERLEV 216
            ++SC+G  + + LPQV+  +++  PN   +E+
Sbjct: 957  VQSCQGLEIISNLPQVRELLVNHCPNLRHVEM 988


>11_06_0699 + 26394482-26396336,26396807-26397480,26397873-26398166
          Length = 940

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 IESCRGCSL-NRLPQVKRFVMDDAPNYERLEV 216
           ++SC+G  + + LPQV+  +++  PN   +E+
Sbjct: 773 VQSCQGLEIISNLPQVRELLVNHCPNLRHVEM 804


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,811,240
Number of Sequences: 37544
Number of extensions: 244737
Number of successful extensions: 453
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)