Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_A06
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.      30   1.1  
AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical ...    28   6.0  
U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z69902-7|CAA93769.1|  618|Caenorhabditis elegans Hypothetical
           protein C47D12.7 protein.
          Length = 618

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 556 SRNITLGKTGMFYNIGLLAHIFKNMNLLILKQHCCEI 446
           SR+    KT ++ N  +L   ++N+NL+  +Q  C++
Sbjct: 22  SRSPNFNKTSIYSNPTMLGEFYQNLNLMRCQQELCDV 58


>AB023424-1|BAA82800.1|  618|Caenorhabditis elegans kel-1 protein.
          Length = 618

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -3

Query: 556 SRNITLGKTGMFYNIGLLAHIFKNMNLLILKQHCCEI 446
           SR+    KT ++ N  +L   ++N+NL+  +Q  C++
Sbjct: 22  SRSPNFNKTSIYSNPTMLGEFYQNLNLMRCQQELCDV 58


>AC024211-2|AAF36064.2|  152|Caenorhabditis elegans Hypothetical
           protein Y76B12C.3 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +1

Query: 115 SARIESCRGCSLNRLPQVKRFVMDDAPNY--ERLEVKFINGAPP 240
           +A +E C  C+L R PQV+ FV  D       +++VK + G  P
Sbjct: 76  TAILEVCE-CNLARFPQVQAFVHKDMARQFGGKVKVKHVRGVRP 118


>U00043-10|AAC77505.1|  779|Caenorhabditis elegans Hypothetical
           protein T26A5.2a protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 82  VSNAYDTSDIVSARIESCRGCSLNRLPQVKRFVMDDAPNYERLEV 216
           +SNA  TS   S+R E      L+ +P VKRF   D+   +++ +
Sbjct: 1   MSNASSTSSGRSSRAEVLWADVLSHIPFVKRFTTPDSRKEQKVRI 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,421,955
Number of Sequences: 27780
Number of extensions: 230632
Number of successful extensions: 434
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)